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BaseInfo

ncRNA ID	novel_osa_miR2212
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:18828007-18828177 [-]
Reference genome	IRGSP-1.0
Source	SRR1849770
Length	22
Mature sequence(if miRNA)	150 - UCAAAUUGUUUUAAGUUUGACU - 171
Stem-loop(if miRNA)	--                U     U          C   CA           A     GUAAAUUAGUUU  --U     CAAUAAU    UA   UCAAAUUGUUUUAAGU UGACU AGUUUAUAGA AAA  UAGUAAUAUUU UAAUA            CA   CAAAU       UGAA  U   |||||||||||||||| ||||| |||||||||| |||  ||||||||||| |||||            ||   |||||       ||||   AGUUUGACGAAAUUCA ACUGA UCAAAUAUCU UUU  AUCAUUAUAAA AUUGU            GU   GUUUA       ACUU  A UC                C     U          U   UC           A     ------------  UCU     -AAUAAU    UU
Stem-loop sequence	UCAAAUUGUUUUAAGUUUGACUUAGUUUAUAGACAAACAUAGUAAUAUUUAUAAUAGUAAAUUAGUUUCAUCAAAUCAAUAAUUGAAUAUAUUUUCAUAAUAAAUUUGUCUUGUGUUAAAAAUAUUACUACUUUUUUCUAUAAACUUAGUCACACUUAAAGCAGUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288358.1	ncRNA:22   UCAGUUUGAAUUUUGUUAAACU   1   =||||||||||||=|||||||| targets:1055   GGUCAAACUUAAAGCAAUUUGA   1076 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
AK106793.1	ncRNA:22   UCAGUUUGAAUUUUGUUAAACU   1   **||||||||||||||=||||| targets:358   UAUCAAACUUAAAACAGUUUGA   379 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-116-A11, full insert sequence	NA	coding protein	psRNATarget
AK242901.1	ncRNA:22   UCAGUUUGAAUUUUGUUAAACU   1   =*||=||||||||||||||||| targets:1391   GAUCGAACUUAAAACAAUUUGA   1412 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090081L24, full insert sequence	NA	coding protein	psRNATarget
XM_015788305.1	ncRNA:22   UCAGUUUGAAUUUUGUUAAACU   1   =*||=||||||||||||||||| targets:1441   GAUCGAACUUAAAACAAUUUGA   1462 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group F-box/FBD/LRR-repeat protein At1g13570 (LOC4340210), transcript variant X1, mRNA	F-box/FBD/LRR-repeat protein At1g13570(LOC4340210)	coding protein	psRNATarget
CT836663.1	ncRNA:22   UCAGUUUGAAUUUUGUUAAACU   1   **|||||=||*||||||||||| targets:1129   UUUCAAAUUUCAAACAAUUUGA   1150 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA106M21, full insert sequence	NA	coding protein	psRNATarget