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BaseInfo

ncRNA ID	novel_osa_miR2209
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:41580940-41581107 [-]
Reference genome	IRGSP-1.0
Source	SRR1849770
Length	20
Mature sequence(if miRNA)	149 - UUUUUAAUAAACGUUUGACC - 168
Stem-loop(if miRNA)	--        A           U              AAAA         U   -CAUU     -UA     A     UUUAU      UUUUUAAU AACGUUUGACC UUCGUCUUAUUCAA    UUUAUGUAA UAU     UAUUU   CUGUG CUUGA     CAUC   |||||||| ||||||||||| ||||||||||||||    ||||||||| |||     |||||   ||||| |||||     |||A   AAAAAUUG UUGCAAACUGG AAGUAGAAUAAGUU    AAAUACGUU AUG     AUGAA   GAUAC GAAUU     GUAA UA        G           U              -AAA         U   UUUUU     UAC     -     -UCUU
Stem-loop sequence	UUUUUAAUAAACGUUUGACCUUUCGUCUUAUUCAAAAAAUUUAUGUAAUUAUCAUUUAUUUUACUGUGACUUGAUUUAUCAUCAAAUGUUCUUUAAGCAUAGCAUAAGUAUUUUUGUAUUUGCAUAAAAAAUUGAAUAAGAUGAAUGGUCAAACGUUGGUUAAAAAAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236237.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   |||||||||||*|||||||| targets:149   GGUCAAACGUUGAUUAAAAA   168 Target Full Sequence	1.5	Sequence 2232 from Patent EP2985353	NA	coding protein	psRNATarget
JB164568.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   |||||||||||*|||||||| targets:149   GGUCAAACGUUGAUUAAAAA   168 Target Full Sequence	1.5	Sequence 2232 from Patent EP2559767	NA	coding protein	psRNATarget
HI404107.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   |||||||||||*|||||||| targets:149   GGUCAAACGUUGAUUAAAAA   168 Target Full Sequence	1.5	Sequence 2232 from Patent EP2074227	NA	coding protein	psRNATarget
CT830705.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   |||||||||||*|||||||| targets:383   GGUCAAACGUUGAUUAAAAA   402 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024N07, full insert sequence	NA	coding protein	psRNATarget
AK288671.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   ||||||*=|||||||||||| targets:395   GGUCAAUUGUUUAUUAAAAA   414 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090058O14, full insert sequence	NA	coding protein	psRNATarget
AK068361.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   *|||||||||||||*||||| targets:744   AGUCAAACGUUUAUCAAAAA   763 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013146F13, full insert sequence	NA	coding protein	psRNATarget
AK288488.1	ncRNA:20   CCAGUUUGCAAAUAAUUUUU   1   *|||||||||||*||||||| targets:2554   UGUCAAACGUUUCUUAAAAA   2573 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090040I02, full insert sequence	NA	coding protein	psRNATarget