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BaseInfo

ncRNA ID	novel_osa_miR2196
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:4606098-4606189 [-]
Reference genome	IRGSP-1.0
Source	SRR1849769
Length	24
Mature sequence(if miRNA)	1 - UUACCAACCGAGACUAAAGAUCAA - 24
Stem-loop(if miRNA)	--           C A                    C  C     G   GAUCUUUAGUC C GUUGGUAACAUCAACCGGGA UA AGAUG C   ||||||||||| | |||||||||||||||||||| || |||||   CUAGAAAUCAG G CAACCAUUGUGGUUGGUCCU AU UCUAC U AA           A C                    A  U     C
Stem-loop sequence	GAUCUUUAGUCCCAGUUGGUAACAUCAACCGGGACUACAGAUGGCUCCAUCUUUAAUCCUGGUUGGUGUUACCAACCGAGACUAAAGAUCAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288734.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   |||||||||||||*|||||||||| targets:45   UUGAUCUUUAGUCCCGGUUGGUAA   68 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090063I24, full insert sequence	NA	coding protein	psRNATarget
XM_015755256.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   *||||||||||||*|||||||||| targets:141   AUGAUCUUUAGUCCCGGUUGGUAA   164 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4346665 (LOC4346665), transcript variant X2, mRNA	uncharacterized LOC4346665(LOC4346665)	coding protein	psRNATarget
AK288438.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   |**||||||||||*|||||||||| targets:2361   UAAAUCUUUAGUCCCGGUUGGUAA   2384 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   |*|||||||||||*|||||||||| targets:236   UAGAUCUUUAGUCCCGGUUGGUAA   259 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
XM_015779829.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   **|||||||||||*|||||||||| targets:1698   AGGAUCUUUAGUCCCGGUUGGUAA   1721 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4335182 (LOC4335182), mRNA	uncharacterized LOC4335182(LOC4335182)	coding protein	psRNATarget
AK288463.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   ****|||||||||||||||||||| targets:598   CCUCUCUUUAGUCUCGGUUGGUAA   621 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   ||*||||||||||*|||||||||* targets:927   UUAAUCUUUAGUCCCGGUUGGUAU   950 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget
AK288598.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   |*|=*||||||||*|||||||||| targets:941   UGGGACUUUAGUCCCGGUUGGUAA   964 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051P05, full insert sequence	NA	coding protein	psRNATarget
AK121178.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   **|||||||||||*|||||||||* targets:1906   ACGAUCUUUAGUCCCGGUUGGUAU   1929 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023083G22, full insert sequence	NA	coding protein	psRNATarget
XM_015755884.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   ||-||||||||||*|||||||||* targets:1373   UU-AUCUUUAGUCCCGGUUGGUAU   1395 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group S-norcoclaurine synthase 1 (LOC4346830), mRNA	S-norcoclaurine synthase 1(LOC4346830)	coding protein	psRNATarget
AK065811.1	ncRNA:24   AACUAGAAAUCAGAGCCAACCAUU   1   |**||||||||||*|||||||||= targets:1903   UAAAUCUUUAGUCCCGGUUGGUAG   1926 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget