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BaseInfo

ncRNA ID novel_osa_miR2185
Species Oryza sativa
Class miRNA
Genome position Chr1:4221666-4221773 [-]
Reference genome IRGSP-1.0
Source SRR1555746;SRR2099568;SRR1556014;SRR4407958
Length 24
Mature sequence(if miRNA) 85 - ACCAACCUAGUAUCGGAUGUGACA - 108
Stem-loop(if miRNA) --ACCAAC    U                UUUAG                    AA
        CUAG AUCGGAUGUGACACAU     UAUUAUGAAUCUAGAUAUAC  A
        |||| ||||||||||||||||     ||||||||||||||||||||  C
        GAUU UAGUCUACGCUGUGUA     AUGAUAUUUAGAUCUGUAUG  U
UUUGCUUA    U                -----                    CU
Stem-loop sequence ACCAACCUAGUAUCGGAUGUGACACAUUUUAGUAUUAUGAAUCUAGAUAUACAAACUUCGUAUGUCUAGAUUUAUAGUAAUGUGUCGCAUCUGAUUUUAGAUUCGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK119339.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  |||||||||=|=||||||||||||
targets:363   UGUCACAUCUGGUACUAGGUUGGU   386

2.5 Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence NA coding protein psRNATarget
AK242632.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  |*|||||||=||||||||||||||
targets:381   UAUCACAUCUGAUACUAGGUUGGU   404

1.0 Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence NA coding protein psRNATarget
LQ236093.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  ||||*||||=||||||||||||*|
targets:100   UGUCCCAUCUGAUACUAGGUUGCU   123

2.5 Sequence 2088 from Patent EP2985353 NA coding protein psRNATarget
HI403963.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  ||||*||||=||||||||||||*|
targets:100   UGUCCCAUCUGAUACUAGGUUGCU   123

2.5 Sequence 2088 from Patent EP2074227 NA coding protein psRNATarget
JB164424.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  ||||*||||=||||||||||||*|
targets:100   UGUCCCAUCUGAUACUAGGUUGCU   123

2.5 Sequence 2088 from Patent EP2559767 NA coding protein psRNATarget
AK068076.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  *||-=||||||*|||||||||||*
targets:873   GGU-GCAUCCGCUACUAGGUUGGC   895

2.5 Oryza sativa Japonica Group cDNA clone:J013132D03, full insert sequence NA coding protein psRNATarget
AK067441.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  *||-=||||||*|||||||||||*
targets:1398   GGU-GCAUCCGCUACUAGGUUGGC   1420

2.5 Oryza sativa Japonica Group cDNA clone:J013100E18, full insert sequence NA coding protein psRNATarget
XM_015781222.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  *||-=||||||*|||||||||||*
targets:1415   GGU-GCAUCCGCUACUAGGUUGGC   1437

2.5 PREDICTED: Oryza sativa Japonica Group putative glucuronosyltransferase PGSIP8 (LOC4336612), mRNA putative glucuronosyltransferase PGSIP8(LOC4336612) coding protein psRNATarget
AK070954.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  *||-=||||||*|||||||||||*
targets:2206   GGU-GCAUCCGCUACUAGGUUGGC   2228

2.5 Oryza sativa Japonica Group cDNA clone:J023072I01, full insert sequence NA coding protein psRNATarget
AK071925.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  *||=*|||||*|||||||*|||||
targets:1159   AGUUUCAUCCAAUACUAGAUUGGU   1182

2.5 Oryza sativa Japonica Group cDNA clone:J013069L02, full insert sequence NA coding protein psRNATarget
AK099958.1
ncRNA:24   ACAGUGUAGGCUAUGAUCCAACCA   1
  *||=*|||||*|||||||*|||||
targets:1160   AGUUUCAUCCAAUACUAGAUUGGU   1183

2.5 Oryza sativa Japonica Group cDNA clone:J013126A13, full insert sequence NA coding protein psRNATarget