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BaseInfo

ncRNA ID	novel_osa_miR2184
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:13547376-13547557 [-]
Reference genome	IRGSP-1.0
Source	SRR1849769
Length	22
Mature sequence(if miRNA)	1 - UAGCAGAUCAGAUAGAUCUAGC - 22
Stem-loop(if miRNA)	--        -  C    G     AGA   U    A      C    UA            C  AA   -        GCG  A -A     CG   UAGAUCUA CU GAUC GCUGU   UAU AACA UAUAUA UCCU  UAUUGAUAUAUA UU  AUC AAGUGAUU   AU G  UCGGU  C   |||||||| || |||| |||||   ||| |||| |||||| ||||  |||||||||||| ||  ||| ||||||||   || |  |||||   AUCUAGAU GA CUAG CGAUA   AUA UUGU AUAUAU AGGG  AUAAUUAUAUAU AA  UAG UUCACUAA   UG C  AGCCG  C CG        A  -    A     -CG   C    -      U    UG            A  GC   A        AUA  A AG     UA
Stem-loop sequence	UAGAUCUACUCGAUCGGCUGUAGAUAUUAACAAUAUAUACUCCUUAUAUUGAUAUAUACUUAAAUCAAGUGAUUGCGAUAGAUCGGUCGCCAUGCCGAGACAGUAUAAAUCACUUAGAUCGAAAUAUAUAUUAAUAGUGGGAUUAUAUAUGUUCAUAGCAUAGCAGAUCAGAUAGAUCUAGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI404346.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   |||||||||||||||||*|||| targets:16   GCUAGAUCUAUCUGAUCGGCUA   37 Target Full Sequence	1.5	Sequence 2471 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236476.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   |||||||||||||||||*|||| targets:16   GCUAGAUCUAUCUGAUCGGCUA   37 Target Full Sequence	1.5	Sequence 2471 from Patent EP2985353	NA	coding protein	psRNATarget
JB164807.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   |||||||||||||||||*|||| targets:16   GCUAGAUCUAUCUGAUCGGCUA   37 Target Full Sequence	1.5	Sequence 2471 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015785385.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:672   CAGAGGUUUAUCUGAUCUGCUU   693 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin ligase BIG BROTHER (LOC4339966), mRNA	E3 ubiquitin ligase BIG BROTHER(LOC4339966)	coding protein	psRNATarget
CT829435.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:902   CAGAGGUUUAUCUGAUCUGCUU   923 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA107A15, full insert sequence	NA	coding protein	psRNATarget
HQ123581.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:674   CAGAGGUUUAUCUGAUCUGCUU   695 Target Full Sequence	3.0	Oryza sativa Japonica Group cultivar Taipei 309 E3 ligase (BBI1) mRNA, complete cds	NA	coding protein	psRNATarget
AK104425.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:674   CAGAGGUUUAUCUGAUCUGCUU   695 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:006-205-F10, full insert sequence	NA	coding protein	psRNATarget
AK068302.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:678   CAGAGGUUUAUCUGAUCUGCUU   699 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013144A04, full insert sequence	NA	coding protein	psRNATarget
AY207044.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:581   CAGAGGUUUAUCUGAUCUGCUU   602 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) zinc-finger protein mRNA, complete cds	NA	coding protein	psRNATarget
AY225189.1	ncRNA:22   CGAUCUAGAUAGACUAGACGAU   1   ***||=|=|||||||||||||* targets:581   CAGAGGUUUAUCUGAUCUGCUU   602 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) zinc finger protein mRNA, complete cds	NA	coding protein	psRNATarget