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BaseInfo

ncRNA ID novel_osa_miR2181
Species Oryza sativa
Class miRNA
Genome position Chr8:18853348-18853406 [+]
Reference genome IRGSP-1.0
Source SRR1849769
Length 21
Mature sequence(if miRNA) 1 - UUUCGAUCGUUGGAUCUAGCU - 21
Stem-loop(if miRNA) --UUU                 U G  AG
     CGAUCGUUGGAUCUAGC G GC  G
     ||||||||||||||||| | ||  A
     GCUAGCAACCUAGAUUG U CG  U
CAAAC                 U G  GG
Stem-loop sequence UUUCGAUCGUUGGAUCUAGCUGGGCAGGAUGGGCGUUGUUAGAUCCAACGAUCGCAAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK100297.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  |||||||||||||||||||||
targets:1351   AGCUAGAUCCAACGAUCGAAA   1371

0.0 Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence NA coding protein psRNATarget
XM_015793616.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  |||||||||||||||||||||
targets:1526   AGCUAGAUCCAACGAUCGAAA   1546

0.0 PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA probable auxin efflux carrier component 4(LOC4346116) coding protein psRNATarget
HI404119.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  ||=|||||||||||||||=||
targets:97   AGUUAGAUCCAACGAUCGGAA   117

2.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
JB164580.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  ||=|||||||||||||||=||
targets:97   AGUUAGAUCCAACGAUCGGAA   117

2.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
LQ236249.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  ||=|||||||||||||||=||
targets:97   AGUUAGAUCCAACGAUCGGAA   117

2.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
XM_015779289.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=||||||||||||||||||
targets:1546   UGUUAGAUCCAACGAUCGAAA   1566

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779283.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=||||||||||||||||||
targets:1737   UGUUAGAUCCAACGAUCGAAA   1757

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779276.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=||||||||||||||||||
targets:1744   UGUUAGAUCCAACGAUCGAAA   1764

1.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
HI403939.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||=||||
targets:64   UGUUAGAUCCAACGAUUGAAA   84

2.5 Sequence 2064 from Patent EP2074227 NA coding protein psRNATarget
JB164400.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||=||||
targets:64   UGUUAGAUCCAACGAUUGAAA   84

2.5 Sequence 2064 from Patent EP2559767 NA coding protein psRNATarget
LQ236069.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||=||||
targets:64   UGUUAGAUCCAACGAUUGAAA   84

2.5 Sequence 2064 from Patent EP2985353 NA coding protein psRNATarget
AK108234.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||||=||
targets:493   UGUUAGAUCCAACGAUCGGAA   513

2.5 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
XM_015786123.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||||=||
targets:706   CGUUAGAUCCAACGAUCGGAA   726

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK287529.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||||=||
targets:217   CGUUAGAUCCAACGAUCGGAA   237

2.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||||=||
targets:217   CGUUAGAUCCAACGAUCGGAA   237

2.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
XM_015778221.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||||=||
targets:3055   UGUUAGAUCCAACGAUCGGAA   3075

2.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:21   UCGAUCUAGGUUGCUAGCUUU   1
  *|=|||||||||||||||=||
targets:3106   UGUUAGAUCCAACGAUCGGAA   3126

2.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
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