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BaseInfo

ncRNA ID	novel_osa_miR2175
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:11236750-11236915 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769;SRR2040390;SRR2040394;SRR2040403
Length	24
Mature sequence(if miRNA)	1 - AGUUUUUGUUUGCACUGUUUGACC - 24
Stem-loop(if miRNA)	--            C                    U         -AAAA    AAUUAUUAUUUAUUUUUUUUGACUUAUUU   AGUUUUUGUUUG ACUGUUUGACCACUCGUCUU UUUAAAAAA     UUGG                             U   |||||||||||| |||||||||||||||||||| |||||||||     ||||                             A   UCAAAAACGAAU UGACAAACUGGUGAGCAGAA AAAUUUUUU     CAUU                             U AU            A                    U         AAACA    UAUAUUUUUUGCUUUUCAAUGAAACCUAU
Stem-loop sequence	AGUUUUUGUUUGCACUGUUUGACCACUCGUCUUUUUUAAAAAAAAAAUUGGAAUUAUUAUUUAUUUUUUUUGACUUAUUUUAUUAUCCAAAGUAACUUUUCGUUUUUUAUAUUUACACAAAUUUUUUAAAUAAGACGAGUGGUCAAACAGUAUAAGCAAAAACUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT837708.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||||||||=|||||||| targets:674   GGUCAAACAGUGCAAGCAAAAACU   697 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
AK288595.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:815   GGUCAAACGGUGCAAGCAAAAACU   838 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   ||||||||=||||||=|||||||| targets:876   GGUCAAACGGUGCAAGCAAAAACU   899 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288846.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |*|||||||||||||=|||||||| targets:63   GAUCAAACAGUGCAAGCAAAAACU   86 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090075E22, full insert sequence	NA	coding protein	psRNATarget
AK288977.1	ncRNA:24   CCAGUUUGUCACGUUUGUUUUUGA   1   |||||||||*|*|||||||||||| targets:1829   GGUCAAACAAUACAAACAAAAACU   1852 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget