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BaseInfo

ncRNA ID	novel_osa_miR2172
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:14917728-14917840 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769;SRR1849784
Length	24
Mature sequence(if miRNA)	1 - AUUGAGAUCCUCUGACGUUACUGU - 24
Stem-loop(if miRNA)	--                      GUUUA  -      --------             AUC   AUUGAGAUCCUCUGACGUUACU     CC AUGACU        GACAUGUGGGCCC   A   ||||||||||||||||||||||     || ||||||        |||||||||||||   C   UGACUCUAGGAGACUGCAAUGA     GG UACUGA        CUGUACACCCGGG   U CC                      ---AG  A      ACCACCGA             CUC
Stem-loop sequence	AUUGAGAUCCUCUGACGUUACUGUUUACCAUGACUGACAUGUGGGCCCAUCACUCUCGGGCCCACAUGUCAGCCACCAAGUCAUAGGGAAGUAACGUCAGAGGAUCUCAGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289236.1	ncRNA:24   UGUCAUUGCAGUCUCCUAGAGUUA   1   =*|||*|||||||||||||||||| targets:399   GAAGUCACGUCAGAGGAUCUCAAU   422 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100074F11, full insert sequence	NA	coding protein	psRNATarget
XM_015758003.1	ncRNA:24   UGUC--AUUGCAGUCUCCUAGAGUUA   1   *|||--||=||*|||||||||||||| targets:2064   UCAGGUUAGCGACAGAGGAUCUCAAU   2089 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107279033 (LOC107279033), mRNA	uncharacterized LOC107279033(LOC107279033)	coding protein	psRNATarget
AK121651.1	ncRNA:24   UGUCAUUGCAGUCUCCUAGAGUUA   1   =***|*|||||||||||||*|||| targets:1707   GACUUCACGUCAGAGGAUCCCAAU   1730 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033061A12, full insert sequence	NA	coding protein	psRNATarget
AK105773.1	ncRNA:24   UGUCAUUGCAGUCUCCUAGAGUUA   1   =***|*|||||||||||||*|||| targets:1711   GACUUCACGUCAGAGGAUCCCAAU   1734 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-202-F01, full insert sequence	NA	coding protein	psRNATarget
XM_015757550.1	ncRNA:24   UGUCAUUGCAGUCUCCUAGAGUUA   1   =***|*|||||||||||||*|||| targets:1848   GACUUCACGUCAGAGGAUCCCAAU   1871 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cytochrome P450 89A2 (LOC4349105), mRNA	cytochrome P450 89A2(LOC4349105)	coding protein	psRNATarget