| ncRNA ID | novel_osa_miR2170 |
| Species | Oryza sativa |
| Class | miRNA |
| Genome position | Chr5:2049540-2049735 [+] |
| Reference genome | IRGSP-1.0 |
| Source | SRR1849769;SRR2040380;SRR2040399;SRR2040401;SRR2040402;SRR2040403;SRR2040407;SRR2040408;SRR2857729;SRR3123648;SRR1738235 |
| Length | 24 |
| Mature sequence(if miRNA) | 1 - ACGGAACUACAGAUUUAAUGCACC - 24 |
| Stem-loop(if miRNA) |
-- CA C ---CA A G U GAAG A U - G -C C ACGGAACUA GAUUUAAUG AC UAUCACAAA CUACA AUUUAG GAU UUAUCA AGAAUUACA AUUUUA GA UUUAGAU AUAG A ||||||||| ||||||||| || ||||||||| ||||| |||||| ||| |||||| ||||||||| |||||| || ||||||| |||| C UGUUUUGAU CUAAAUUGU UG AUAGUGUUU GAUGU UAAAUU UUG AAUAGU UUUUGAUGU UAAAAU UU AAAUUUA UAUU U AG AA - AUAAA - A U AUAA G C A G UU A |
| Stem-loop sequence | ACGGAACUACAGAUUUAAUGCACCAUAUCACAAAACUACAGAUUUAGUGAUGAAGUUAUCAAAGAAUUACAUAUUUUAGAGUUUAGAUCAUAGCACUAUUAUUUAUUUAAAGUUAUAAAAUCUGUAGUUUUGUGAUAAAAUAGUUUUUAAAUAUGUAGUUUGUGAUAAAAUAGUUGUUAAAUCAAUAGUUUUGUGA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_015792093.1 |
|
1.0 | PREDICTED: Oryza sativa Japonica Group pentatricopeptide repeat-containing protein At1g13040, mitochondrial (LOC4344353), transcript variant X1, mRNA | pentatricopeptide repeat-containing protein At1g13040, mitochondrial(LOC4344353) | coding protein | psRNATarget | |||||||||
| AK101635.1 |
|
1.0 | Oryza sativa Japonica Group cDNA clone:J033055B02, full insert sequence | NA | coding protein | psRNATarget | |||||||||
| AK288881.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090079G03, full insert sequence | NA | coding protein | psRNATarget |