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BaseInfo

ncRNA ID	novel_osa_miR2167
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:445103-445271 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769
Length	24
Mature sequence(if miRNA)	146 - AUGGUUAAACGUUGGUCAAGAAGU - 169
Stem-loop(if miRNA)	--     U                    C          AC   A     U   -CAUU     -UA     G     UU         UUUUU AUCAACGUUUGACCAUUUGU UUAUUUAAAA  UUU UGUAA UAU     UAUUU   UUAUG CUUGA  UAUCAUC   ||||| |||||||||||||||||||| ||||||||||  ||| ||||| |||     |||||   ||||| |||||  ||||||A   AAGAA UGGUUGCAAAUUGGUAAGCA AAUAAAUUUU  AAA ACGUU AUG     AUAAA   AGUAC GAAUU  AUAGUAA UG     C                    A          AA   C     U   UUUUU     UAC     -     -U
Stem-loop sequence	UUUUUUAUCAACGUUUGACCAUUUGUCUUAUUUAAAAACUUUAUGUAAUUAUCAUUUAUUUUAUUAUGGCUUGAUUUAUCAUCAAAUGAUAUUUAAGCAUGACAUAAAUAUUUUUGUAUUUGCACAAAAAUUUUAAAUAAAACGAAUGGUUAAACGUUGGUCAAGAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015783195.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=|||||=||||||||||||| targets:1531   ACUUUUUGACUAACGUUUAACCAU   1554 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group FHA domain-containing protein DDL (LOC4339504), partial mRNA	FHA domain-containing protein DDL(LOC4339504)	coding protein	psRNATarget
XM_015779878.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=|||||||||||||=||||| targets:192   ACUUUUUGACCAACGUUUGACCAU   215 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group AT-hook motif nuclear-localized protein 9 (LOC4337449), mRNA	AT-hook motif nuclear-localized protein 9(LOC4337449)	coding protein	psRNATarget
AK288622.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=|||||=||||||||||||| targets:2540   ACUUUUUGACUAACGUUUAACCAU   2563 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090054F13, full insert sequence	NA	coding protein	psRNATarget
CT830705.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=||*|=|||||||||||||| targets:231   ACUUUUUAAUCAACGUUUAACCAU   254 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI024N07, full insert sequence	NA	coding protein	psRNATarget
CT829159.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=|||*|||||||||=||||| targets:881   ACUUUUUGUCCAACGUUUGACCAU   904 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN009P22, full insert sequence	NA	coding protein	psRNATarget
AK241906.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=|||||=|||*||||||||| targets:1264   ACUUUUUGACUAACAUUUAACCAU   1287 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075049G22, full insert sequence	NA	coding protein	psRNATarget
AK288290.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=|*|||||||||||=||||| targets:1608   ACUUUUCGACCAACGUUUGACCAU   1631 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
AK121277.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   |=||=|*|||||||||||=||||| targets:727   AUUUUUCGACCAACGUUUGACCAU   750 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023108A04, full insert sequence	NA	coding protein	psRNATarget
AK103228.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   |=||=|||*|||||||||=||||| targets:2642   AUUUUUUGUCCAACGUUUGACCAU   2665 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033123C21, full insert sequence	NA	coding protein	psRNATarget
XM_015788430.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=||**||||||||||||||| targets:1335   ACUUUUUAUCCAACGUUUAACCAU   1358 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X3, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
XM_015788428.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=||**||||||||||||||| targets:1477   ACUUUUUAUCCAACGUUUAACCAU   1500 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group 12-oxophytodienoate reductase 1 (LOC4340490), transcript variant X1, mRNA	12-oxophytodienoate reductase 1(LOC4340490)	coding protein	psRNATarget
AK288671.1	ncRNA:24   UGAAGAACUGGUUGCAAAUUGGUA   1   ||||=*|*|||||||||||||||* targets:247   ACUUUAUAACCAACGUUUAACCAC   270 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090058O14, full insert sequence	NA	coding protein	psRNATarget