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BaseInfo

ncRNA ID	novel_osa_miR2165
Species	Oryza sativa
Class	miRNA
Genome position	Chr3:7239159-7239329 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769
Length	22
Mature sequence(if miRNA)	1 - UCAAACUGCUUUAAAUUUGACU - 22
Stem-loop(if miRNA)	--       G                        AU   UA           A    A     UUAGUUUCAU     CAAUAAU    UA   UCAAACU CUUUAAAUUUGACUAAGUUUAUAG  AAA  UAGUAAUAUUU CAAC CCAAA          CAAAU       UGAA  U   ||||||| ||||||||||||||||||||||||  |||  ||||||||||| |||| |||||          |||||       ||||   AGUUUGA GAAGUUUAGAUUGGUUCAAAUAUC  UUU  AUCAUUGUAAA GUUG GGUUU          GUUUA       GCUU  A UC       A                        CU   UC           A    -     ---------U     -AACAAU    UU
Stem-loop sequence	UCAAACUGCUUUAAAUUUGACUAAGUUUAUAGAUAAAUAUAGUAAUAUUUACAACACCAAAUUAGUUUCAUCAAAUCAAUAAUUGAAUAUAUUUUCGUAACAAAUUUGUUUUGGGUUGAAAAUGUUACUACUUUUUCCUAUAAACUUGGUUAGAUUUGAAGAAGUUUGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ236252.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   =||=|||||||||||||||||| targets:179   GGUUAAAUUUAAAGCAGUUUGA   200 Target Full Sequence	1.0	Sequence 2247 from Patent EP2985353	NA	coding protein	psRNATarget
HI404122.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   =||=|||||||||||||||||| targets:179   GGUUAAAUUUAAAGCAGUUUGA   200 Target Full Sequence	1.0	Sequence 2247 from Patent EP2074227	NA	coding protein	psRNATarget
JB164583.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   =||=|||||||||||||||||| targets:179   GGUUAAAUUUAAAGCAGUUUGA   200 Target Full Sequence	1.0	Sequence 2247 from Patent EP2559767	NA	coding protein	psRNATarget
XM_015778310.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   =||||||*||=||||||||||| targets:2280   GGUCAAACUUGAAGCAGUUUGA   2301 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group gamma-glutamyltranspeptidase 1 (LOC4336033), mRNA	gamma-glutamyltranspeptidase 1(LOC4336033)	coding protein	psRNATarget
AK065071.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   =*|=||||||||||=||||||| targets:2531   GAUUAAAUUUAAAGUAGUUUGA   2552 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013001K07, full insert sequence	NA	coding protein	psRNATarget
CT837874.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   |*|||||*||=||||||||||| targets:302   AAUCAAACUUGAAGCAGUUUGA   323 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN062A18, full insert sequence	NA	coding protein	psRNATarget
AK288358.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   =||||||*||||||||*||||| targets:1055   GGUCAAACUUAAAGCAAUUUGA   1076 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090024L19, full insert sequence	NA	coding protein	psRNATarget
XM_015756529.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   |*|||||*||=||||||||||| targets:998   AAUCAAACUUGAAGCAGUUUGA   1019 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA3 (LOC9271983), mRNA	putative disease resistance protein RGA3(LOC9271983)	coding protein	psRNATarget
CT829996.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   **|||||*||||||*||||||| targets:875   UAUCAAACUUAAAGAAGUUUGA   896 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN033J11, full insert sequence	NA	coding protein	psRNATarget
AK106793.1	ncRNA:22   UCAGUUUAAAUUUCGUCAAACU   1   **|||||*|||||*|||||||| targets:358   UAUCAAACUUAAAACAGUUUGA   379 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-116-A11, full insert sequence	NA	coding protein	psRNATarget