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BaseInfo

ncRNA ID novel_osa_miR2154
Species Oryza sativa
Class miRNA
Genome position Chr2:4899778-4899858 [-]
Reference genome IRGSP-1.0
Source SRR1849769
Length 24
Mature sequence(if miRNA) 58 - AAUACAAGAGAUUUUAGGUGGAUG - 81
Stem-loop(if miRNA) ---AAUACA    A      G        ACA  ---    AA
         AGAG UUUUAG UGGAUGUG   CA   UUAU  U
         |||| |||||| ||||||||   ||   ||||
         UCUU AAAAUU AUCUACAU   GU   AAUA  A
UAUUAUAUA    -      A        CAA  CUA    AC
Stem-loop sequence AAUACAAGAGAUUUUAGGUGGAUGUGACACAUUAUAAUACAAUAAAUCUGAACUACAUCUAAUUAAAAUUCUAUAUAUUAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK069433.1
ncRNA:24   GUAGGUGGAUUUUAGAGAACAUAA   1
  =||||||||||||||||||*||||
targets:373   UAUCCACCUAAAAUCUCUUAUAUU   396

1.5 Oryza sativa Japonica Group cDNA clone:J023025M19, full insert sequence NA coding protein psRNATarget