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BaseInfo

ncRNA ID	novel_osa_miR2143
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:4493917-4494082 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769
Length	23
Mature sequence(if miRNA)	1 - UUUACUUGCAACGUUUGACUACU - 23
Stem-loop(if miRNA)	--   A    C                          --UA     -    UAUUAUUUAUUUUAU     A    CUU    AU   UUU CUUG AACGUUUGACUACUCGUCUUAUUCAA    UUUUG AAAU               UUGUG CUUA   UAUU  C   ||| |||| ||||||||||||||||||||||||||    ||||| ||||               ||||| ||||   ||||   AAA GAAC UUGCGAACUGGUGAGCAGAAUAAGUU    AAAAC UUUA               AACAC GAAU   AUGA  C AA   C    A                          UAAA     G    UAUUUUUUGCUUUUC     -    UUC    CA
Stem-loop sequence	UUUACUUGCAACGUUUGACUACUCGUCUUAUUCAAUAUUUUGAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCACAGUACUUUAAGCACAACUUUUCGUUUUUUAUAUUUGCAAAAAAAUUUGAAUAAGACGAGUGGUCAAGCGUUACAAGCAAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288319.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |||=||||||||||||||||||| targets:1851   AGUGGUCAAACGUUGCAAGUAAA   1873 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090021O08, full insert sequence	NA	coding protein	psRNATarget
AK100009.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |||=|||||||||||||||*||| targets:1037   AGUGGUCAAACGUUGCAAGCAAA   1059 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |||=|||||||||||||||*||| targets:3057   AGUGGUCAAACGUUGCAAGCAAA   3079 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |||=|||||||||||||||*||| targets:4053   AGUGGUCAAACGUUGCAAGCAAA   4075 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK102017.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |*|=|||||||||||||||*||| targets:1056   AAUGGUCAAACGUUGCAAGCAAA   1078 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J033080F19, full insert sequence	NA	coding protein	psRNATarget
XM_015773783.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |||=*||||||||||||||*||| targets:1977   AGUGAUCAAACGUUGCAAGCAAA   1999 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X1, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget
XM_015773784.1	ncRNA:23   UCAUCAGUUUGCAACGUUCAUUU   1   |||=*||||||||||||||*||| targets:2071   AGUGAUCAAACGUUGCAAGCAAA   2093 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group alanine aminotransferase 2 (LOC9266500), transcript variant X2, mRNA	alanine aminotransferase 2(LOC9266500)	coding protein	psRNATarget