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BaseInfo

ncRNA ID	novel_osa_miR2141
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:29441933-29442113 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769;SRR2040385;SRR2040392;SRR2040410
Length	24
Mature sequence(if miRNA)	158 - AAACGUUGCAAGAAAAACUCAAAA - 181
Stem-loop(if miRNA)	--UUA       U   A    U       A               U      AC    AUAAAAAAUAAAAAG     -    AAG  C  U      AGUUUUU CUU UAAU UUUGACC CUCGUCUUAUUUAAA UUUUUU  AAAU               UUGUG CUUA   UA UG A      ||||||| ||| |||| ||||||| ||||||||||||||| ||||||  ||||               ||||| ||||   || ||      UCAAAAA GAA GUUG AAACUGG GAGCAGAAUAAAUUU AAAAAA  UUUA               AACAC GAAU   AU AU G AAAAC       -   C    C       C               U      -C    AUAAUAAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUAAGUUUUUUCUUAUAAUUUUUGACCACUCGUCUUAUUUAAAUUUUUUUACAAAUAUAAAAAAUAAAAAGUUGUGCUUAAAGUACUGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUCAAAAAAUUUUAAAUAAGACGAGCGGUCAAACGUUGCAAGAAAAACUCAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAAACUCAAAAA-GAACGUUGCAAA   1   ||||||||||||-|||||||||||| targets:3846   UUUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAAACUCAAAAA-GAACGUUGCAAA   1   ||||||||||||-|||||||||||| targets:3901   UUUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
AK111038.1	ncRNA:24   AAAACUCAAAAA-GAACGUUGCAAA   1   ||||||||||||-|||||||||||| targets:484   UUUUGAGUUUUUGCUUGCAACGUUU   508 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AAAACUCAAAAA-GAACGUUGCAAA   1   ||||*|||||||-|||||||||||| targets:486   UUUUAAGUUUUUGCUUGCAACGUUU   510 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
XM_015789462.1	ncRNA:24   AAAACUCAAAAAGAACGUUGCAAA   1   ||||*||||||||||*|||||||| targets:573   UUUUAAGUUUUUCUUACAACGUUU   596 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
AK108488.1	ncRNA:24   AAAACUCAAAAAGAACGUUGCAAA   1   ||||*||||||||||*|||||||| targets:111   UUUUAAGUUUUUCUUACAACGUUU   134 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-143-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015787781.1	ncRNA:24   AAAACUCAAAAAGAACGUUGCAAA   1   **|**=|||||||||||||*|||| targets:2022   AAUCAGGUUUUUCUUGCAAGGUUU   2045 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group brefeldin A-inhibited guanine nucleotide-exchange protein 1 (LOC4341555), transcript variant X1, mRNA	brefeldin A-inhibited guanine nucleotide-exchange protein 1(LOC4341555)	coding protein	psRNATarget
XM_015787782.1	ncRNA:24   AAAACUCAAAAAGAACGUUGCAAA   1   **|**=|||||||||||||*|||| targets:2022   AAUCAGGUUUUUCUUGCAAGGUUU   2045 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group brefeldin A-inhibited guanine nucleotide-exchange protein 1 (LOC4341555), transcript variant X2, mRNA	brefeldin A-inhibited guanine nucleotide-exchange protein 1(LOC4341555)	coding protein	psRNATarget