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BaseInfo

ncRNA ID	novel_osa_miR2140
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:25873344-25873406 [+]
Reference genome	IRGSP-1.0
Source	SRR1849769
Length	21
Mature sequence(if miRNA)	43 - UUCAUCGUACUAGAAUAUGUC - 63
Stem-loop(if miRNA)	--         A          CC     UA   CAUAUUCUA UACGAUGAAU  GGAUA  G   ||||||||| ||||||||||  |||||  A   GUAUAAGAU AUGCUACUUA  CCUGU  G CU         C          UA     CU
Stem-loop sequence	CAUAUUCUAAUACGAUGAAUCCGGAUAUAGAGUCUGUCCAUAUUCAUCGUACUAGAAUAUGUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK242632.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   ||||||||||||||||||||| targets:321   GACAUAUUCUAGUACGAUGAA   341 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090022M05, full insert sequence	NA	coding protein	psRNATarget
AK107495.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   |||||||||||||||*||||| targets:926   GACAUAUUCUAGUACUAUGAA   946 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-129-D07, full insert sequence	NA	coding protein	psRNATarget
AK119339.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   |||||||||||||||*||||| targets:306   GACAUAUUCUAGUACUAUGAA   326 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:001-131-D05, full insert sequence	NA	coding protein	psRNATarget
XM_015770193.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   |||||||||||||||*||||| targets:1074   GACAUAUUCUAGUACUAUGAA   1094 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329136 (LOC4329136), transcript variant X1, mRNA	uncharacterized LOC4329136(LOC4329136)	coding protein	psRNATarget
AK111475.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   |||||||*|||||=||||||| targets:1293   GACAUAUCCUAGUGCGAUGAA   1313 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence	NA	coding protein	psRNATarget
AK109681.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   ||=|||||||||||||||*|| targets:1688   GAUAUAUUCUAGUACGAUAAA   1708 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-145-D01, full insert sequence	NA	coding protein	psRNATarget
XM_015783505.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   ||=|||||||||||||||*|| targets:1681   GAUAUAUUCUAGUACGAUAAA   1701 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group UPF0481 protein At3g47200 (LOC4337710), mRNA	UPF0481 protein At3g47200(LOC4337710)	coding protein	psRNATarget
AK119335.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   |||||||*|||||=||||||| targets:1123   GACAUAUCCUAGUGCGAUGAA   1143 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence	NA	coding protein	psRNATarget
JB164813.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   ||||||*||||||||*||||| targets:46   GACAUAAUCUAGUACAAUGAA   66 Target Full Sequence	2.5	Sequence 2477 from Patent EP2559767	NA	coding protein	psRNATarget
HI404352.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   ||||||*||||||||*||||| targets:46   GACAUAAUCUAGUACAAUGAA   66 Target Full Sequence	2.5	Sequence 2477 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236482.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   ||||||*||||||||*||||| targets:46   GACAUAAUCUAGUACAAUGAA   66 Target Full Sequence	2.5	Sequence 2477 from Patent EP2985353	NA	coding protein	psRNATarget
AK063452.1	ncRNA:21   CUGUAUAAGAUCAUGCUACUU   1   |||||||*|||||||*||||| targets:115   GACAUAUCCUAGUACUAUGAA   135 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-115-G03, full insert sequence	NA	coding protein	psRNATarget