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BaseInfo

ncRNA ID	novel_osa_miR2130
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:22648207-22648407 [+]
Reference genome	IRGSP-1.0
Source	SRR1849768
Length	24
Mature sequence(if miRNA)	1 - AACGUAGAUUACUGACAAAACCUA - 24
Stem-loop(if miRNA)	--                                     A         A     C                              A  --GAA    UAC   AACGUAGAUUACUGACAAAACCUAUUCCAUAACCUCU GGCUAUUUU CGAGA GAAUCUAAUGAGGUAUAUUAAUUCAUGAUU GC     UGAU   U   ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| ||     ||||   G   UUGCAUCUAAUGACUGUUUUGGGUAAGGUAUUGGGGA CCGAUAAAA GCUCU CUUAGAUUGCUCCAUAUAAUUAGGUACUAA CG     ACUA   U AU                                     A         C     A                              A  AUGUC    CGA
Stem-loop sequence	AACGUAGAUUACUGACAAAACCUAUUCCAUAACCUCUAGGCUAUUUUACGAGACGAAUCUAAUGAGGUAUAUUAAUUCAUGAUUAGCGAAUGAUUACUGUAGCAUCACUGUAGCAAAUCAUGGAUUAAUAUACCUCGUUAGAUUCAUCUCGCAAAAUAGCCAAGGGGUUAUGGAAUGGGUUUUGUCAGUAAUCUACGUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781418.1	ncRNA:24   AUCCAAAACAGUCAUUAGAUGCAA   1   ||||||||*|||||||||||=||| targets:1305   UAGGUUUUAUCAGUAAUCUAUGUU   1328 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   AUCCAAAACAGUCAUUAGAUGCAA   1   ||||||||*|||||||||||=||| targets:1216   UAGGUUUUAUCAGUAAUCUAUGUU   1239 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
AK240978.1	ncRNA:24   AUCCAAAACAGUCAUUAGAUGCAA   1   |||-||||||*|||||||||=||| targets:541   UAG-UUUUGUAAGUAAUCUAUGUU   563 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   AUCCAAAACAGUCAUUAGAUGCAA   1   |**|||||||=|*||||||||||| targets:21   UUUGUUUUGUUAUUAAUCUACGUU   44 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
XM_015762321.1	ncRNA:24   AU-CC------AAAACAGUCAUUAGAUGCAA   1   ||-||------||||*||||||||||||||| targets:1102   UAUGGAAUGAAUUUUAUCAGUAAUCUACGUU   1132 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget