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BaseInfo

ncRNA ID	novel_osa_miR2127
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:5275551-5275721 [-]
Reference genome	IRGSP-1.0
Source	SRR1849768
Length	24
Mature sequence(if miRNA)	1 - GGUUAAACGUUGGACACGGAAAUC - 24
Stem-loop(if miRNA)	--              -                  A     UUUUUUUAUAAUUC UAUUUUCAUUGUUGUUAGAUGAUAAAACAU   UUUCCGUGUCCAAC UUUGACUGUUCGUCUUAU UGAAA              G                              G   |||||||||||||| |||||||||||||||||| |||||              |                              A   AAAGGCACAGGUUG AAAUUGGCAGGCAGAAUA ACUUU              U                              U CU              C                  A     -UUAAUCUUUUUUU AAUUUUUCUGUUCAGUGCGAAUUUUAUAAU
Stem-loop sequence	UUUCCGUGUCCAACUUUGACUGUUCGUCUUAUAUGAAAUUUUUUUAUAAUUCGUAUUUUCAUUGUUGUUAGAUGAUAAAACAUGAUUAAUAUUUUAAGCGUGACUUGUCUUUUUAAUUUUUUUUCUAAUUUUUCAAAUAAGACGGACGGUUAAACGUUGGACACGGAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT832631.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=||||||||||||||||||=||| targets:336   GGUUUCCGUGUCCAACGUUUGACC   359 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA021A12, full insert sequence	NA	coding protein	psRNATarget
CT832630.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=||||||||||||||||||=||| targets:336   GGUUUCCGUGUCCAACGUUUGACC   359 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA020B12, full insert sequence	NA	coding protein	psRNATarget
XM_015792475.1	ncRNA:24   CU-AAAGGCACAGGUUGCAAAUUGG   1   ||-||||||||||||||||||=||| targets:2601   GAGUUUCCGUGUCCAACGUUUGACC   2625 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X4, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015792473.1	ncRNA:24   CU-AAAGGCACAGGUUGCAAAUUGG   1   ||-||||||||||||||||||=||| targets:2587   GAGUUUCCGUGUCCAACGUUUGACC   2611 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group hydrophobic protein LTI6A (LOC4344028), transcript variant X2, mRNA	hydrophobic protein LTI6A(LOC4344028)	coding protein	psRNATarget
XM_015772621.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   *|||||||||||||||||||=||= targets:400   AAUUUCCGUGUCCAACGUUUGACU   423 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4332894 (LOC4332894), mRNA	uncharacterized LOC4332894(LOC4332894)	coding protein	psRNATarget
AK107240.1	ncRNA:24   CU-AAAGGCACAGGUUGCAAAUUGG   1   ||-||||=||||=|||||||||||| targets:1744   GAGUUUCUGUGUUCAACGUUUAACC   1768 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-F04, full insert sequence	NA	coding protein	psRNATarget
AK288606.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=||||||||||||||||||*||= targets:2344   GGUUUCCGUGUCCAACGUUUUACU   2367 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090052P16, full insert sequence	NA	coding protein	psRNATarget
AK288529.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=*|||||||||||||||||=||| targets:68   GGCUUCCGUGUCCAACGUUUGACC   91 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090044M17, full insert sequence	NA	coding protein	psRNATarget
AK242553.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=||||||||*|||||||||=||| targets:176   GGUUUCCGUGCCCAACGUUUGACC   199 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J080319L22, full insert sequence	NA	coding protein	psRNATarget
XM_015771325.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=|*||||||||||||||||=||= targets:1209   GGUCUCCGUGUCCAACGUUUGACU   1232 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein synthesis inhibitor I (LOC4324068), mRNA	protein synthesis inhibitor I(LOC4324068)	coding protein	psRNATarget
AK287584.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=|*||||||||||||||||=||= targets:1186   GGUCUCCGUGUCCAACGUUUGACU   1209 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065044J10, full insert sequence	NA	coding protein	psRNATarget
AB051108.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=|*||||||||||||||||=||= targets:1181   GGUCUCCGUGUCCAACGUUUGACU   1204 Target Full Sequence	2.5	Oryza sativa RIP2 mRNA for ribosome inactivating protein 2, complete cds	NA	coding protein	psRNATarget
AK103707.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |=|*||||||||||||||||=||= targets:1191   GGUCUCCGUGUCCAACGUUUGACU   1214 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033136O07, full insert sequence	NA	coding protein	psRNATarget
AK070212.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   *=|||||*||||||||||||=||| targets:1277   AGUUUCCAUGUCCAACGUUUGACC   1300 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023044F01, full insert sequence	NA	coding protein	psRNATarget
XM_015770137.1	ncRNA:24   CUAAAGGCACAGGUUGCAAAUUGG   1   |||*||||||*|||||||||=||| targets:3138   GAUAUCCGUGCCCAACGUUUGACC   3161 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable LRR receptor-like serine/threonine-protein kinase At4g36180 (LOC9268112), mRNA	probable LRR receptor-like serine/threonine-protein kinase At4g36180(LOC9268112)	coding protein	psRNATarget