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BaseInfo

ncRNA ID	novel_osa_miR2117
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:16998604-16998719 [-]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR1849769;SRR1849771;SRR1849774;SRR2040382;SRR2857731;SRR2857732;SRR2857734;SRR2857735;SRR2857736
Length	21
Mature sequence(if miRNA)	1 - UUUACUCGUGAUGACGUGGAC - 21
Stem-loop(if miRNA)	--    A                -U    CUUCCAAUAAAAUUUCUAUUUAUGAGUAA   CCAC UCAUCAUGAGUAAAAA  UUUA                             A   |||| ||||||||||||||||  ||||                             C   GGUG AGUAGUGCUCAUUUUU  AAAG                             C CA    C                UA    AGCAUCGUGUUCAUUUUUUAUAAGAGUAU
Stem-loop sequence	CCACAUCAUCAUGAGUAAAAAUUUUACUUCCAAUAAAAUUUCUAUUUAUGAGUAAACCUAUGAGAAUAUUUUUUACUUGUGCUACGAGAAAAUUUUUUACUCGUGAUGACGUGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835866.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   ||=|||||||||||||||||| targets:203   GUUCACGUCAUCACGAGUAAA   223 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027A04, full insert sequence	NA	coding protein	psRNATarget
AK243022.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   ||=|||||||||||||||||| targets:1334   GUUCACGUCAUCACGAGUAAA   1354 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100001E20, full insert sequence	NA	coding protein	psRNATarget
XM_015755327.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   ||=|||||||||||||||||| targets:1498   GUUCACGUCAUCACGAGUAAA   1518 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable cinnamyl alcohol dehydrogenase 8D (LOC4346993), mRNA	probable cinnamyl alcohol dehydrogenase 8D(LOC4346993)	coding protein	psRNATarget
XM_015790977.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   |||||=||||||||||||||| targets:3283   GUCCAUGUCAUCACGAGUAAA   3303 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X3, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
XM_015790976.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   |||||=||||||||||||||| targets:3630   GUCCAUGUCAUCACGAGUAAA   3650 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X2, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
AK072439.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   |||||=|||||||=||||||| targets:1495   GUCCAUGUCAUCAUGAGUAAA   1515 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023111C14, full insert sequence	NA	coding protein	psRNATarget
JB164648.1	ncRNA:21   CAGGUGCAGUAGUGCUCA-UUU   1   ||||||||||||||||||-||| targets:4   GUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2312 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236317.1	ncRNA:21   CAGGUGCAGUAGUGCUCA-UUU   1   ||||||||||||||||||-||| targets:4   GUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2312 from Patent EP2985353	NA	coding protein	psRNATarget
HI404187.1	ncRNA:21   CAGGUGCAGUAGUGCUCA-UUU   1   ||||||||||||||||||-||| targets:4   GUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2312 from Patent EP2074227	NA	coding protein	psRNATarget
HI404532.1	ncRNA:21   CAGGUGCAGUAGUGCUCA-UUU   1   ||||||||||||||||||-||| targets:4   GUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2657 from Patent EP2074227	NA	coding protein	psRNATarget
JB164993.1	ncRNA:21   CAGGUGCAGUAGUGCUCA-UUU   1   ||||||||||||||||||-||| targets:4   GUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2657 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236662.1	ncRNA:21   CAGGUGCAGUAGUGCUCA-UUU   1   ||||||||||||||||||-||| targets:4   GUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2657 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236492.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   ||||||||||||||*|||||| targets:19   GUCCACGUCAUCACAAGUAAA   39 Target Full Sequence	1.5	Sequence 2487 from Patent EP2985353	NA	coding protein	psRNATarget
JB164823.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   ||||||||||||||*|||||| targets:19   GUCCACGUCAUCACAAGUAAA   39 Target Full Sequence	1.5	Sequence 2487 from Patent EP2559767	NA	coding protein	psRNATarget
HI404362.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   ||||||||||||||*|||||| targets:19   GUCCACGUCAUCACAAGUAAA   39 Target Full Sequence	1.5	Sequence 2487 from Patent EP2074227	NA	coding protein	psRNATarget
AK288868.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   *|=||=||||||||||||||| targets:5437   AUUCAUGUCAUCACGAGUAAA   5457 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
JB164763.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   *||*||||||||||||||||| targets:21   AUCAACGUCAUCACGAGUAAA   41 Target Full Sequence	1.0	Sequence 2427 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236432.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   *||*||||||||||||||||| targets:21   AUCAACGUCAUCACGAGUAAA   41 Target Full Sequence	1.0	Sequence 2427 from Patent EP2985353	NA	coding protein	psRNATarget
HI404302.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   *||*||||||||||||||||| targets:21   AUCAACGUCAUCACGAGUAAA   41 Target Full Sequence	1.0	Sequence 2427 from Patent EP2074227	NA	coding protein	psRNATarget
AK288313.1	ncRNA:21   CAGGUGCAGUAGUGCUCAUUU   1   *|||||||||||||*|||||| targets:3576   AUCCACGUCAUCACAAGUAAA   3596 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget