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BaseInfo

ncRNA ID	novel_osa_miR2112
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:14075046-14075219 [-]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR1738217
Length	22
Mature sequence(if miRNA)	153 - UUUUUGUUUGUAACGUUUGACC - 174
Stem-loop(if miRNA)	--          U  C                              UUGCAAA     ---------------GAA   GAAAAGUUAUGCUUAA   UUUUUGUUUG AA GUUUGACCACUCGUCUUAUUUAAUUUUUUU       UAUUA                  AAC                A   |||||||||| || ||||||||||||||||||||||||||||||       |||||                  |||   AAAAACGAAC UU CAAACUGGUGAGCAGAAUAAGUUAAAAAAA       AUAAU                  AUG                G UC          C  A                              -UUUUUA     AAAUAAAAUAAACACUGA   AAAUAAUAGAUGGCAU
Stem-loop sequence	UUUUUGUUUGUAACGUUUGACCACUCGUCUUAUUUAAUUUUUUUUUGCAAAUAUUAGAAAACGAAAAGUUAUGCUUAAAGUACGGUAGAUAAUAAAGUAAGUCACAAAUAAAAUAAAUAAUAAUUUUUAAAAAAAUUGAAUAAGACGAGUGGUCAAACAUUCCAAGCAAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB164127.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	0.0	Sequence 1791 from Patent EP2559767	NA	coding protein	psRNATarget
HI403666.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	0.0	Sequence 1791 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235796.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:153   GGUCAAACGUUACAAACAAAAA   174 Target Full Sequence	0.0	Sequence 1791 from Patent EP2985353	NA	coding protein	psRNATarget
HI404009.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	0.0	Sequence 2134 from Patent EP2074227	NA	coding protein	psRNATarget
JB164470.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	0.0	Sequence 2134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236139.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:156   GGUCAAACGUUACAAACAAAAA   177 Target Full Sequence	0.0	Sequence 2134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403728.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	0.0	Sequence 1853 from Patent EP2074227	NA	coding protein	psRNATarget
JB164189.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	0.0	Sequence 1853 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235858.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:159   GGUCAAACGUUACAAACAAAAA   180 Target Full Sequence	0.0	Sequence 1853 from Patent EP2985353	NA	coding protein	psRNATarget
CT831424.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:719   GGUCAAACGUUACAAACAAAAA   740 Target Full Sequence	0.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038D01, full insert sequence	NA	coding protein	psRNATarget
AK107988.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:721   GGUCAAACGUUACAAACAAAAA   742 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-135-F03, full insert sequence	NA	coding protein	psRNATarget
XM_015779114.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:759   GGUCAAACGUUACAAACAAAAA   780 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4326202 (LOC4326202), mRNA	uncharacterized LOC4326202(LOC4326202)	coding protein	psRNATarget
XM_015780608.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:1787   GGUCAAACGUUACAAACAAAAA   1808 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group amino acid permease 3 (LOC4336246), mRNA	amino acid permease 3(LOC4336246)	coding protein	psRNATarget
AK288465.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |||||||||||||||||||||| targets:830   GGUCAAACGUUACAAACAAAAA   851 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090036M08, full insert sequence	NA	coding protein	psRNATarget
AK109584.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   ||||||||*|||||||=||||| targets:1116   GGUCAAACAUUACAAAUAAAAA   1137 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-137-A10, full insert sequence	NA	coding protein	psRNATarget
AK288977.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   ||||||||**|||||||||||| targets:1829   GGUCAAACAAUACAAACAAAAA   1850 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget
XM_015761823.1	ncRNA:22   CCAGUUUGCAAUGUUUGUUUUU   1   |**||||||*|||||||||||= targets:23   GACCAAACGCUACAAACAAAAG   44 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group tetracycline resistance protein, class A (LOC4349793), mRNA	tetracycline resistance protein, class A(LOC4349793)	coding protein	psRNATarget