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BaseInfo

ncRNA ID	novel_osa_miR2110
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:4137072-4137143 [+]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1555749;SRR2097779;SRR2098560;SRR1556014;SRR4407777;SRR4407953;SRR4407954;SRR4407955;SRR4407956;SRR4407959;SRR4407960;SRR1556016;SRR4407961;SRR4407962
Length	24
Mature sequence(if miRNA)	1 - AACACGAACCGGGACUAAAGAUGG - 24
Stem-loop(if miRNA)	--     G               UG         GC   AACAC AACCGGGACUAAAGA  GCUCAGCCG  C   ||||| |||||||||||||||  |||||||||   UUGUG UUGGCCCUGAUUUCU  UGAGUCGGU  A CA     G               GU         GC
Stem-loop sequence	AACACGAACCGGGACUAAAGAUGGCUCAGCCGGCCACGUGGCUGAGUUGUCUUUAGUCCCGGUUGGUGUUAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   |*||||||||||||||||*||||| targets:1829   CGAUCUUUAGUCCCGGUUGGUGUU   1852 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK288377.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   |*||||||||||||||||*||||| targets:1375   CGAUCUUUAGUCCCGGUUGGUGUU   1398 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026K06, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   =*||||||||||||||||*||||| targets:2380   UGAUCUUUAGUCCCGGUUAGUGUU   2403 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   **||||||||||||||||*||||| targets:146   AGAUCUUUAGUCCCGGUUGGUGUU   169 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
JB164747.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   =*||||||||||||||||*||||| targets:41   UGAUCUUUAGUCCCGGUUAGUGUU   64 Target Full Sequence	1.5	Sequence 2411 from Patent EP2559767	NA	coding protein	psRNATarget
HI404286.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   =*||||||||||||||||*||||| targets:41   UGAUCUUUAGUCCCGGUUAGUGUU   64 Target Full Sequence	1.5	Sequence 2411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236416.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   =*||||||||||||||||*||||| targets:41   UGAUCUUUAGUCCCGGUUAGUGUU   64 Target Full Sequence	1.5	Sequence 2411 from Patent EP2985353	NA	coding protein	psRNATarget
AK288470.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   |||-|||||||||||||||||*|| targets:29   CCA-CUUUAGUCCCGGUUCGUUUU   51 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090037J05, full insert sequence	NA	coding protein	psRNATarget
XM_015782079.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   |||-|||||||||||||||||*|| targets:822   CCA-CUUUAGUCCCGGUUCGUUUU   844 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group E3 ubiquitin-protein ligase ZFP91-like (LOC107280837), mRNA	E3 ubiquitin-protein ligase ZFP91-like(LOC107280837)	coding protein	psRNATarget
XM_015758314.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   ||--||||||||||||||=||||| targets:907   CC--CUUUAGUCCCGGUUUGUGUU   928 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107278346 (LOC107278346), transcript variant X1, mRNA	uncharacterized LOC107278346(LOC107278346)	coding protein	psRNATarget
AK066662.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   *=|||||||||||||||||||*|* targets:654   GUAUCUUUAGUCCCGGUUCGUAUC   677 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK288463.1	ncRNA:24   GGUAGAAAUCAGGGCCAAGCACAA   1   **||||||||||||||||*||||* targets:554   GGAUCUUUAGUCCCGGUUGGUGUC   577 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget