ncRNA ID | novel_osa_miR2108 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr8:1745721-1745814 [+] |
Reference genome | IRGSP-1.0 |
Source | SRR1849767 |
Length | 22 |
Mature sequence(if miRNA) | 73 - UACGAAUAUGAACAAUGCUAGA - 94 |
Stem-loop(if miRNA) |
--        CC  C         G             A     CAU   UAGCAUUG  CA AUUCGUAUA AUGUUAAUGAAUC AGGCA   A   ||||||||  || ||||||||| ||||||||||||| |||||   AUCGUAAC  GU UAAGCAUAU UACAAUUACUUAG UCUGU   U AG        AA  A         A             A     AUA |
Stem-loop sequence | UAGCAUUGCCCACAUUCGUAUAGAUGUUAAUGAAUCAAGGCACAUAUAUAUGUCUAGAUUCAUUAACAUAUAUACGAAUAUGAACAAUGCUAGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_015775404.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X1, mRNA | protein NETWORKED 1A(LOC4331702) | coding protein | psRNATarget | |||||||||
XM_015775405.1 |
|
2.5 | PREDICTED: Oryza sativa Japonica Group protein NETWORKED 1A (LOC4331702), transcript variant X2, mRNA | protein NETWORKED 1A(LOC4331702) | coding protein | psRNATarget |