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BaseInfo

ncRNA ID	novel_osa_miR2104
Species	Oryza sativa
Class	miRNA
Genome position	Chr6:12912307-12912373 [+]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR2040409
Length	24
Mature sequence(if miRNA)	44 - GCUGGAGCUCUGCCGAACAGGCCU - 67
Stem-loop(if miRNA)	--AA         UA         ------    GA     CUGUUUGGC  GGCUCCAGC      UCCA  A     |||||||||  |||||||||      ||||  G     GACAAGCCG  UCGAGGUCG      AGGU  A UCCG         UC         AUUUUA    GG
Stem-loop sequence	AACUGUUUGGCUAGGCUCCAGCUCCAGAAGAGGUGGAAUUUUAGCUGGAGCUCUGCCGAACAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763037.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =||=|||||=||||||||||=||| targets:2238   GGGUCUGUUUGGCAGAGCUCUAGC   2261 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4351859 (LOC4351859), mRNA	uncharacterized LOC4351859(LOC4351859)	coding protein	psRNATarget
AK109804.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =||=|||||=||||||||||=||| targets:1646   GGGUCUGUUUGGCAGAGCUCUAGC   1669 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-147-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015779315.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =||||||||=||||*||||||||| targets:3684   GGGCCUGUUUGGCACAGCUCCAGC   3707 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein Rf1, mitochondrial (LOC9271155), mRNA	protein Rf1, mitochondrial(LOC9271155)	coding protein	psRNATarget
XM_015760175.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =||||||||=||||*||||||||| targets:726   GGGCCUGUUUGGCACAGCUCCAGC   749 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box only protein 7 (LOC4350849), mRNA	F-box only protein 7(LOC4350849)	coding protein	psRNATarget
XM_015787270.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   *||||||||=||||*||||||||| targets:9490   CGGCCUGUUUGGCACAGCUCCAGC   9513 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA	uncharacterized LOC4341670(Os06g0647801)	coding protein	psRNATarget
XM_015768498.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =|||=||||=||||*||||||||| targets:1103   GGGCUUGUUUGGCACAGCUCCAGC   1126 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X1, mRNA	calcineurin B-like protein 8(LOC107276173)	coding protein	psRNATarget
XM_015768499.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =|||=||||=||||*||||||||| targets:1070   GGGCUUGUUUGGCACAGCUCCAGC   1093 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group calcineurin B-like protein 8 (LOC107276173), transcript variant X2, mRNA	calcineurin B-like protein 8(LOC107276173)	coding protein	psRNATarget
AK288048.1	ncRNA:24   UCC-GGACAAGCCGUCUCGAGGUCG   1   *||-||||||=||||*||||||||| targets:3430   UGGACCUGUUUGGCACAGCUCCAGC   3454 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J075146M20, full insert sequence	NA	coding protein	psRNATarget
XM_015775467.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =***=||||=|||*|||||||||| targets:1941   GAAAUUGUUUGGCUGAGCUCCAGC   1964 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group elongation of fatty acids protein 3-like (LOC4333830), mRNA	elongation of fatty acids protein 3-like(LOC4333830)	coding protein	psRNATarget
XM_015768148.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =***|||||=|||*|||||||||| targets:1212   GAAACUGUUUGGCUGAGCUCCAGC   1235 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group chorismate mutase 2 (LOC4328508), mRNA	chorismate mutase 2(LOC4328508)	coding protein	psRNATarget
AK101220.1	ncRNA:24   UCCGGACAAGCCGUCUCGAGGUCG   1   =***|||||=|||*|||||||||| targets:1183   GAAACUGUUUGGCUGAGCUCCAGC   1206 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033031C20, full insert sequence	NA	coding protein	psRNATarget