Search result

BaseInfo

ncRNA ID	novel_osa_miR2091
Species	Oryza sativa
Class	miRNA
Genome position	Chr10:9470400-9470499 [-]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR1738210
Length	24
Mature sequence(if miRNA)	1 - AUGAAUGUGAAUAAUGCUAGAAAG - 24
Stem-loop(if miRNA)	--           CC     A   A                  A   CAU   UUCUAGUAUUG  CACAU CAU UAGAUGUUAAUGAAUCUA ACA   A   |||||||||||  ||||| ||| |||||||||||||||||| |||   AAGAUCGUAAU  GUGUA GUA AUUUACAAUUACUUAGAU UGU   C GA           AA     A   A                  C   AUA
Stem-loop sequence	UUCUAGUAUUGCCCACAUACAUAUAGAUGUUAAUGAAUCUAAACACAUACAUAUGUCUAGAUUCAUUAACAUUUAAAUGAAUGUGAAUAAUGCUAGAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK070836.1	ncRNA:24   GAAAGAUCGUAAUAAGUGUAAGUA   1   |||||||||||||*|||||||||| targets:1492   CUUUCUAGCAUUACUCACAUUCAU   1515 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023071O06, full insert sequence	NA	coding protein	psRNATarget
XM_015792390.1	ncRNA:24   GAAAGAUCGUAAUAAGUGUAAGUA   1   |||||||||||||*|||||||||| targets:1485   CUUUCUAGCAUUACUCACAUUCAU   1508 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342294 (LOC4342294), transcript variant X1, mRNA	uncharacterized LOC4342294(LOC4342294)	coding protein	psRNATarget
XM_015763411.1	ncRNA:24   GAAAGAUCGUAAUAAGUGUAAGUA   1   ||||=|||=||||*|||||||||| targets:1149   CUUUUUAGUAUUACUCACAUUCAU   1172 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4327906 (LOC4327906), mRNA	uncharacterized LOC4327906(LOC4327906)	coding protein	psRNATarget
AK070352.1	ncRNA:24   GAAAGAUCGUAAUAAGUGUAAGUA   1   |*||||||||||*||||||||||| targets:421   CAUUCUAGCAUUUUUCACAUUCAU   444 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023051F10, full insert sequence	NA	coding protein	psRNATarget
AK065951.1	ncRNA:24   GAAAGAUCGUAAUAAGUGUAAGUA   1   =*||=|||||||*||||||||||| targets:2735   UAUUUUAGCAUUUUUCACAUUCAU   2758 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013045C05, full insert sequence	NA	coding protein	psRNATarget