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BaseInfo

ncRNA ID	novel_osa_miR2089
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:20613854-20613963 [+]
Reference genome	IRGSP-1.0
Source	SRR1298758;SRR1300837
Length	24
Mature sequence(if miRNA)	1 - AAGACGAGUAGUCAAACAGUGCAA - 24
Stem-loop(if miRNA)	--        UA        -    AAAC     C    -AAUU  UU  -UC  UCC   AAGACGAG  GUCAAACA GUGC    AAAAA UCAA     UC  AC   UC   G   ||||||||  |||||||| ||||    ||||| ||||     ||  ||   ||   UUCUGCUU  CAGUUUGU CACG    UUUUU AGUU     AG  UG   AG   U UA        GC        A    ---A     C    GCCAU  UU  UAA  CUU
Stem-loop sequence	AAGACGAGUAGUCAAACAGUGCAAACAAAAACUCAAAAUUUCUUACUCUCUCCGUUUCGAAAUGUUUGAUACCGUUGACUUUUUAGCACAUGUUUGACCGUUCGUCUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK068624.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||||||||||||||||=||||||| targets:51   UUGCACUGUUUGACUAUUCGUCUU   74 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J013153F11, full insert sequence	NA	coding protein	psRNATarget
AK288977.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||||||||||||||*||||||||| targets:1687   UUGCACUGUUUGACCACUCGUCUU   1710 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget
AK072811.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||||||||||||||*||||||||| targets:968   UUGCACUGUUUGACCACUCGUCUU   991 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023143E03, full insert sequence	NA	coding protein	psRNATarget
CT837645.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||||||||||||||*||||||||| targets:468   UUGCACUGUUUGACCACUCGUCUU   491 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063B15, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   |||=||||||||||*||||||||| targets:735   UUGUACUGUUUGACCACUCGUCUU   758 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288595.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   |||=||||||||||*||||||||| targets:674   UUGUACUGUUUGACCACUCGUCUU   697 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
AK064773.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   |||=|**||||||||||||||||| targets:2918   UUGUAACGUUUGACUACUCGUCUU   2941 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013000A22, full insert sequence	NA	coding protein	psRNATarget
XM_015772731.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   |||=|*||||||||*||||||||| targets:200   UUGUAAUGUUUGACCACUCGUCUU   223 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein NRT1/ PTR FAMILY 6.1 (LOC4326444), mRNA	protein NRT1/ PTR FAMILY 6.1(LOC4326444)	coding protein	psRNATarget
AK100009.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   |||=|**||||||||||||||||| targets:898   UUGUAACGUUUGACUACUCGUCUU   921 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013138B09, full insert sequence	NA	coding protein	psRNATarget
CT837708.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   |||=|*||||||||*||||||||| targets:532   UUGUAGUGUUUGACCACUCGUCUU   555 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA220M04, full insert sequence	NA	coding protein	psRNATarget
CT828082.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||*=|=||||||||||*||||||| targets:1149   UUUUAUUGUUUGACUAGUCGUCUU   1172 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA204A03, full insert sequence	NA	coding protein	psRNATarget
LQ236407.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||*=||||||*|||*||||||||| targets:3   UUUUACUGUUAGACCACUCGUCUU   26 Target Full Sequence	2.5	Sequence 2402 from Patent EP2985353	NA	coding protein	psRNATarget
HI404277.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||*=||||||*|||*||||||||| targets:3   UUUUACUGUUAGACCACUCGUCUU   26 Target Full Sequence	2.5	Sequence 2402 from Patent EP2074227	NA	coding protein	psRNATarget
JB164738.1	ncRNA:24   AACGUGACAAACUGAUGAGCAGAA   1   ||*=||||||*|||*||||||||| targets:3   UUUUACUGUUAGACCACUCGUCUU   26 Target Full Sequence	2.5	Sequence 2402 from Patent EP2559767	NA	coding protein	psRNATarget