Search result

BaseInfo

ncRNA ID	novel_osa_miR2087
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:5541425-5541492 [-]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR1849769;SRR1849770;SRR1849773;SRR1849775;SRR2040384;SRR2040385;SRR2040388;SRR2040390;SRR2040396;SRR2040400;SRR2040401;SRR2040407;SRR2040408;SRR2040409
Length	24
Mature sequence(if miRNA)	1 - AAUUCGUUGUACUAGAAUGUGCCU - 24
Stem-loop(if miRNA)	--A     C   C          CUAG   UAUA    CAUAU CUA UAUAACGAAU    ACA    U    ||||| ||| ||||||||||    |||    GUGUA GAU AUGUUGCUUA    UGU    A UCC     A   C          AACA   CUCC
Stem-loop sequence	ACAUAUCCUACUAUAACGAAUCUAGACAUAUAUACCUCUGUACAAAUUCGUUGUACUAGAAUGUGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK241705.1	ncRNA:24   UCC-GUGUAAGAUCAUGUUGCUUAA   1   =||-=|||||||||||||||||||| targets:3339   GGGAUACAUUCUAGUACAACGAAUU   3363 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J065196L09, full insert sequence	NA	coding protein	psRNATarget
JB165003.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||||||||||||*|||| targets:13   UGACACAUUCUAGUACAACAAAUU   36 Target Full Sequence	1.5	Sequence 2667 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236672.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||||||||||||*|||| targets:13   UGACACAUUCUAGUACAACAAAUU   36 Target Full Sequence	1.5	Sequence 2667 from Patent EP2985353	NA	coding protein	psRNATarget
HI404542.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||||||||||||*|||| targets:13   UGACACAUUCUAGUACAACAAAUU   36 Target Full Sequence	1.5	Sequence 2667 from Patent EP2074227	NA	coding protein	psRNATarget
JB164556.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   =**||||||||||||=|||||||* targets:43   GUACACAUUCUAGUAUAACGAAUC   66 Target Full Sequence	2.5	Sequence 2220 from Patent EP2559767	NA	coding protein	psRNATarget
JB164556.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=|||||||||||=|||||||* targets:14   UGAUACAUUCUAGUAUAACGAAUC   37 Target Full Sequence	2.5	Sequence 2220 from Patent EP2559767	NA	coding protein	psRNATarget
HI404095.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   =**||||||||||||=|||||||* targets:43   GUACACAUUCUAGUAUAACGAAUC   66 Target Full Sequence	2.5	Sequence 2220 from Patent EP2074227	NA	coding protein	psRNATarget
HI404095.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=|||||||||||=|||||||* targets:14   UGAUACAUUCUAGUAUAACGAAUC   37 Target Full Sequence	2.5	Sequence 2220 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236225.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   =**||||||||||||=|||||||* targets:43   GUACACAUUCUAGUAUAACGAAUC   66 Target Full Sequence	2.5	Sequence 2220 from Patent EP2985353	NA	coding protein	psRNATarget
LQ236225.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=|||||||||||=|||||||* targets:14   UGAUACAUUCUAGUAUAACGAAUC   37 Target Full Sequence	2.5	Sequence 2220 from Patent EP2985353	NA	coding protein	psRNATarget
XM_015778607.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||=|||||||||||||||||* targets:1055   UGACAUAUUCUAGUACAACGAAUC   1078 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group anthocyanidin reductase (LOC4337098), mRNA	anthocyanidin reductase(LOC4337098)	coding protein	psRNATarget
AK062145.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   ||*||=|*|||||||||||||||* targets:157   AGACAUAAUCUAGUACAACGAAUA   180 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-045-G09, full insert sequence	NA	coding protein	psRNATarget
HI403945.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||||||||||||*|||* targets:13   UGACACAUUCUAGUACAACAAAUC   36 Target Full Sequence	2.5	Sequence 2070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236075.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||||||||||||*|||* targets:13   UGACACAUUCUAGUACAACAAAUC   36 Target Full Sequence	2.5	Sequence 2070 from Patent EP2985353	NA	coding protein	psRNATarget
JB164406.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||||||||||||*|||* targets:13   UGACACAUUCUAGUACAACAAAUC   36 Target Full Sequence	2.5	Sequence 2070 from Patent EP2559767	NA	coding protein	psRNATarget
AK071898.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||*|||||||||||||* targets:2680   UGACACAUUAUAGUACAACGAAUC   2703 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013059B05, full insert sequence	NA	coding protein	psRNATarget
XM_015764610.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*||||||*|||||||||||||* targets:2696   UGACACAUUAUAGUACAACGAAUC   2719 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group BTB/POZ domain-containing protein NPY4 (LOC4352652), mRNA	BTB/POZ domain-containing protein NPY4(LOC4352652)	coding protein	psRNATarget
AK288631.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*|||||||||||||*||||||* targets:4118   UGACACAUUCUAGUACUACGAAUC   4141 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090055C12, full insert sequence	NA	coding protein	psRNATarget
JB164293.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=||||||||||||*||||||* targets:4   UGAUACAUUCUAGUACUACGAAUC   27 Target Full Sequence	2.5	Sequence 1957 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235962.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=||||||||||||*||||||* targets:4   UGAUACAUUCUAGUACUACGAAUC   27 Target Full Sequence	2.5	Sequence 1957 from Patent EP2985353	NA	coding protein	psRNATarget
HI403832.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=||||||||||||*||||||* targets:4   UGAUACAUUCUAGUACUACGAAUC   27 Target Full Sequence	2.5	Sequence 1957 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015785407.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*|||||*|||*||||||||||| targets:1695   UGACACAUCCUAAUACAACGAAUU   1718 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group mitochondrial phosphate carrier protein 3, mitochondrial (LOC4340459), mRNA	mitochondrial phosphate carrier protein 3, mitochondrial(LOC4340459)	coding protein	psRNATarget
AK289139.1	ncRNA:24   UCCGUGUAAGAUCAUGUUGCUUAA   1   *|*=||||*||||||||||*|||| targets:1316   UGAUACAUCCUAGUACAACAAAUU   1339 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090099E06, full insert sequence	NA	coding protein	psRNATarget