ncRNA ID | novel_osa_miR2085 |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr2:34813716-34813819 [-] |
Reference genome | IRGSP-1.0 |
Source | SRR1849767 |
Length | 21 |
Mature sequence(if miRNA) | 1 - UUAAAGUUAGAUAUGAAAACU - 21 |
Stem-loop(if miRNA) |
---UUC      C        -C     UCUU  U           UAUA   A       CGUGUC AACUUUGA  GUUUG    AU UGAAAUAUUUU    GUU U       |||||| ||||||||  |||||    || |||||||||||    |||       GUAUAG UUGAAAUU  CAAAC    UG AUUUUAUAAAA    UAG U UCAAAA      A        AA     -UAU  U           -UAG   A |
Stem-loop sequence | UUCCGUGUCCAACUUUGACGUUUGUCUUAUUUGAAAUAUUUUUAUAGUUAUUAGAUGAUAAAAUAUUUUAUGUUAUCAAACAAUUAAAGUUAGAUAUGAAAACU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK288762.1 |
|
1.5 | Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK289040.1 |
|
2.5 | Oryza sativa Japonica Group cDNA, clone: J090091O20, full insert sequence | NA | coding protein | psRNATarget |