Search result

BaseInfo

ncRNA ID novel_osa_miR2085
Species Oryza sativa
Class miRNA
Genome position Chr2:34813716-34813819 [-]
Reference genome IRGSP-1.0
Source SRR1849767
Length 21
Mature sequence(if miRNA) 1 - UUAAAGUUAGAUAUGAAAACU - 21
Stem-loop(if miRNA) ---UUC      C        -C     UCUU  U           UAUA   A
      CGUGUC AACUUUGA  GUUUG    AU UGAAAUAUUUU    GUU U
      |||||| ||||||||  |||||    || |||||||||||    |||
      GUAUAG UUGAAAUU  CAAAC    UG AUUUUAUAAAA    UAG U
UCAAAA      A        AA     -UAU  U           -UAG   A
Stem-loop sequence UUCCGUGUCCAACUUUGACGUUUGUCUUAUUUGAAAUAUUUUUAUAGUUAUUAGAUGAUAAAAUAUUUUAUGUUAUCAAACAAUUAAAGUUAGAUAUGAAAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288762.1
ncRNA:21   UCAAAAGUAUAGAUUGAAAUU   1
  |||||||||=|||||||||||
targets:912   AGUUUUCAUGUCUAACUUUAA   932

1.5 Oryza sativa Japonica Group cDNA, clone: J090067F13, full insert sequence NA coding protein psRNATarget
AK289040.1
ncRNA:21   UCAAAAGUAUAGAUUGAAAUU   1
  |||||||=|=|||||||||||
targets:2096   AGUUUUCGUGUCUAACUUUAA   2116

2.5 Oryza sativa Japonica Group cDNA, clone: J090091O20, full insert sequence NA coding protein psRNATarget