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BaseInfo

ncRNA ID	novel_osa_miR2084
Species	Oryza sativa
Class	miRNA
Genome position	Chr2:28452923-28453102 [+]
Reference genome	IRGSP-1.0
Source	SRR1849767
Length	24
Mature sequence(if miRNA)	157 - AAACGUUGGAAGCAAAAACUCAAA - 180
Stem-loop(if miRNA)	--  U          A               C                   -A    UAUUAUUUAUUUUAU     A    CUU    AU   UG GUUUUUGCUU CAAUGUUUGAUCACU GUCUUAUUUAAUUUUUUUU  AAAU               UUGUG CUUA   UAUU  C   || |||||||||| ||||||||||||||| |||||||||||||||||||  ||||               ||||| ||||   ||||   AC CAAAAACGAA GUUGCAAACUGGUGA CAGAAUAAAUUAAAAAAAA  UUUA               AACAC GAAU   AUGA  C AA  U          G               A                   CG    UAUUUUUUGCUUUUC     -    UUU    CA
Stem-loop sequence	UGUGUUUUUGCUUACAAUGUUUGAUCACUCGUCUUAUUUAAUUUUUUUUAAAAUUAUUAUUUAUUUUAUUUGUGACUUACUUUAUUAUCCACAGUAUUUUAAGCACAACUUUUCGUUUUUUAUAUUUGCAAAAAAAAUUAAAUAAGACAAGUGGUCAAACGUUGGAAGCAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015763075.1	ncRNA:24   AAACUCAAAAACGAAGGUUGCAAA   1   |||||||||||||||*|||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK111038.1	ncRNA:24   AAACUCAAAAACGAAGGUUGCAAA   1   |||||||||||||||*|||||||| targets:485   UUUGAGUUUUUGCUUGCAACGUUU   508 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AAACUCAAAAACGAAGGUUGCAAA   1   |||*|||||||||||*|||||||| targets:487   UUUAAGUUUUUGCUUGCAACGUUU   510 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget