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BaseInfo

ncRNA ID	novel_osa_miR2079
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:6593644-6593764 [-]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR2040389;SRR2040391;SRR2040394;SRR2040397;SRR2040411;SRR1612404
Length	24
Mature sequence(if miRNA)	98 - AAAAACGAAUCUAAAACUGGAUGU - 121
Stem-loop(if miRNA)	-     C                         ----        -     AUUUU   -    C  AAAAA GAAUCUAAAACUGGAUGUGAUACAU    UCUAGUAC UAUAA     GUC AUAC U  ||||| |||||||||||||||||||||||||    |||||||| |||||     ||| ||||  UUUUU UUUAGAUUUUGACCUGCACUGUGUA    AGAUCAUG AUGUU     UAG UAUG C G     U                         CGUA        C     --GUU   A    U
Stem-loop sequence	AAAAACGAAUCUAAAACUGGAUGUGAUACAUUCUAGUACUAUAAAUUUUGUCAUACCUCUGUAUAGAUUUGUUGUACGUACUAGAAUGCAUGUGUCACGUCCAGUUUUAGAUUUUUUUUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288796.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   ||||||||||*||||||||||||| targets:620   ACAUCCAGUUCUAGAUUCGUUUUU   643 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   |||||||||*|||||||||||||| targets:477   ACAUCCAGUCUUAGAUUCGUUUUU   500 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
XM_015763486.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   =|||||=*|||||||||||||||* targets:1730   GCAUCCGAUUUUAGAUUCGUUUUC   1753 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group purple acid phosphatase 2-like (LOC107278020), mRNA	purple acid phosphatase 2-like(LOC107278020)	coding protein	psRNATarget
AK107107.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   ||||||=||**||||||||||||| targets:930   ACAUCCGGUACUAGAUUCGUUUUU   953 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-122-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015792814.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   =|||=|||*|||||||||*||||| targets:853   GCAUUCAGCUUUAGAUUCAUUUUU   876 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4345888 (LOC4345888), mRNA	uncharacterized LOC4345888(LOC4345888)	coding protein	psRNATarget
XM_015794212.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   |*|||||||**||||||||||||| targets:1150   AAAUCCAGUACUAGAUUCGUUUUU   1173 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325579 (LOC4325579), mRNA	uncharacterized LOC4325579(LOC4325579)	coding protein	psRNATarget
AK063369.1	ncRNA:24   UGUAGGUCAAAAUCUAAGCAAAAA   1   |*|||||||**||||||||||||| targets:1039   AAAUCCAGUACUAGAUUCGUUUUU   1062 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-114-E01, full insert sequence	NA	coding protein	psRNATarget