Search result

BaseInfo

ncRNA ID	novel_osa_miR2076
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:27492724-27492784 [+]
Reference genome	IRGSP-1.0
Source	SRR1849767;SRR2040387;SRR2040408;SRR2040410
Length	24
Mature sequence(if miRNA)	38 - ACCGGUUUUGAUUAGUUAAAGGAC - 61
Stem-loop(if miRNA)	--  --A    GG           -  ----   G   CC   AACU  GAUCAAAACCG UC    GAG G   ||   ||||  ||||||||||| ||    |||   GG   UUGA  UUAGUUUUGGC AG    UUC A CA  AAA    --           C  UGUU   C
Stem-loop sequence	CCAAACUGGGAUCAAAACCGUCGAGGGACCUUUUGUGACCGGUUUUGAUUAGUUAAAGGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288860.1	ncRNA:24   CAGGAAAUUGAUUAGUUUUGGCCA   1   |||=|||||||||||||||||||| targets:544   GUCUUUUAACUAAUCAAAACCGGU   567 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090077C13, full insert sequence	NA	coding protein	psRNATarget
XM_015789497.1	ncRNA:24   CAGGAAAUUGAUUAGUUUUGGCCA   1   ||||*||||||||||||||||||| targets:250   GUCCCUUAACUAAUCAAAACCGGU   273 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1-like (LOC107281489), mRNA	serine/arginine repetitive matrix protein 1-like(LOC107281489)	coding protein	psRNATarget
AK288698.1	ncRNA:24   CAGGAAAUUGAUUAGUUUUGGCCA   1   ||||*||||||||||||||||||| targets:4090   GUCCCUUAACUAAUCAAAACCGGU   4113 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA, clone: J090061C07, full insert sequence	NA	coding protein	psRNATarget
XM_015787059.1	ncRNA:24   CAGGAAAUUGAUUAGUUUUGGCCA   1   ||||*|||||||||||||||=||| targets:122   GUCCCUUAACUAAUCAAAACUGGU   145 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9269954 (LOC9269954), mRNA	uncharacterized LOC9269954(LOC9269954)	coding protein	psRNATarget