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BaseInfo

ncRNA ID	novel_osa_miR2070
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:38671859-38671962 [-]
Reference genome	IRGSP-1.0
Source	SRR1849766;SRR1849778;SRR2857731
Length	24
Mature sequence(if miRNA)	81 - AAGUAGAAUUAUUUAUCCUUGGUC - 104
Stem-loop(if miRNA)	--             U  C        A     CAAGA    AUAUGA     AA   AAGUAGAAUUAUU AU CUUGGUCU UGUGC     UGAA      CUAUC  A   ||||||||||||| || |||||||| |||||     ||||      |||||  A   UUCAUCUUAAUGA UA GAACCAGA ACACG     ACUU      GGUAG  G UA             U  A        C     -----    --GGGA     AU
Stem-loop sequence	AAGUAGAAUUAUUUAUCCUUGGUCUAUGUGCCAAGAUGAAAUAUGACUAUCAAAAGUAGAUGGAGGGUUCAGCACACAGACCAAGAAUUAGUAAUUCUACUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK073029.1	ncRNA:24   CUGGUUCCUAUUUAUUAAGAUGAA   1   ||||||||||||=||||||||||| targets:1869   GACCAAGGAUAAGUAAUUCUACUU   1892 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023146M03, full insert sequence	NA	coding protein	psRNATarget
AK069229.1	ncRNA:24   CUGGUUCCUAUUUAUUAAGAUGAA   1   |||=||||||||=||||||||||| targets:2365   GACUAAGGAUAAGUAAUUCUACUU   2388 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:J023012H21, full insert sequence	NA	coding protein	psRNATarget
XM_015776051.1	ncRNA:24   CUGGUUCCUAUUUAUUAAGAUGAA   1   |||=||||||||=||||||||||| targets:2409   GACUAAGGAUAAGUAAUUCUACUU   2432 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group probable cyclic nucleotide-gated ion channel 6 (LOC4333569), mRNA	probable cyclic nucleotide-gated ion channel 6(LOC4333569)	coding protein	psRNATarget
CT833089.1	ncRNA:24   CUGGUUCCUAUUUAUUAAGAUGAA   1   ||||||||*|||=||||||||||| targets:173   GACCAAGGUUAAGUAAUUCUACUU   196 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA032E06, full insert sequence	NA	coding protein	psRNATarget
AK121928.1	ncRNA:24   CUGGUUCCUAUUUAUUAAGAUGAA   1   |||=|||*||||*||||||||||| targets:4077   GACUAAGAAUAAUUAAUUCUACUU   4100 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J033106J05, full insert sequence	NA	coding protein	psRNATarget
CT836199.1	ncRNA:24   CUGGUUCCUAUUUAUUAAGAUGAA   1   |===**|||||||||||||*|||| targets:616   GGUUUUGGAUAAAUAAUUCAACUU   639 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA001F19, full insert sequence	NA	coding protein	psRNATarget