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BaseInfo

ncRNA ID	novel_osa_miR2061
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:28555227-28555413 [+]
Reference genome	IRGSP-1.0
Source	SRR1849766
Length	25
Mature sequence(if miRNA)	163 - ACAGUGCAAGUAAAAACUCAAAAUC - 187
Stem-loop(if miRNA)	--                           C    A   A          AAUUUG    UAUUAUUUAUAUUUUUUGUGACUUACUUUAUUAUCCA   UUUUGAGUUUUUAUUUGUACUGUUUGA CGCU GUC UAUUCAAAAA      AAAU                                     G   ||||||||||||||||||||||||||| |||| ||| ||||||||||      ||||                                     A   AAAACUCAAAAAUGAACGUGACAAACU GUGA CAG AUAAGUUUUU      AAAA                                     G CU                           A    G   A          ------    CACGUUUAUAUUUUGGGCUUUUCAACAUGAAUUUCAU
Stem-loop sequence	UUUUGAGUUUUUAUUUGUACUGUUUGACCGCUAGUCAUAUUCAAAAAAAUUUGAAAUUAUUAUUUAUAUUUUUUGUGACUUACUUUAUUAUCCAGAGUACUUUAAGUACAACUUUUCGGGUUUUAUAUUUGCACAAAAUUUUUGAAUAAGACGAGUGAUCAAACAGUGCAAGUAAAAACUCAAAAUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015773291.1	ncRNA:25   CUAAAACUCAAAAAUGAACGUGACA   1   ||||||||||||||||||||||||| targets:2136   GAUUUUGAGUUUUUACUUGCACUGU   2160 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9272202 (LOC9272202), mRNA	uncharacterized LOC9272202(LOC9272202)	coding protein	psRNATarget
AK288977.1	ncRNA:25   CUAAAACUCAAAAAUGAACGUGACA   1   ||||||||||||||=|||||||||| targets:1671   GAUUUUGAGUUUUUGCUUGCACUGU   1695 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090085K17, full insert sequence	NA	coding protein	psRNATarget
XM_015790568.1	ncRNA:25   CUAAAACUCAAAAAUGAACGUGACA   1   *||||||||||||||||||=||||| targets:719   AAUUUUGAGUUUUUACUUGUACUGU   743 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107277036 (LOC107277036), mRNA	uncharacterized LOC107277036(Os07g0616850)	coding protein	psRNATarget
AK288595.1	ncRNA:25   CUAAAACUCAAAAAUGAACGUGACA   1   *||||||||||||||||||=||||| targets:658   AAUUUUGAGUUUUUACUUGUACUGU   682 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090051J16, full insert sequence	NA	coding protein	psRNATarget
AK100378.1	ncRNA:25   CUAAAACUCAAAAAUGAACGUGACA   1   *|||||||**||||||||||||||| targets:1379   AAUUUUGACAUUUUACUUGCACUGU   1403 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023085B20, full insert sequence	NA	coding protein	psRNATarget
AK065068.1	ncRNA:25   CUAAAACUCAAAAAUGAACGUGACA   1   *|||||||**||||||||||||||| targets:1104   AAUUUUGACAUUUUACUUGCACUGU   1128 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013001K02, full insert sequence	NA	coding protein	psRNATarget