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BaseInfo

ncRNA ID	novel_osa_miR2059
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:25286894-25287095 [+]
Reference genome	IRGSP-1.0
Source	SRR1849766;SRR1849771;SRR2040404;SRR2040409;SRR2040410
Length	24
Mature sequence(if miRNA)	1 - AAACGUAGAUUACUGACAAAACCA - 24
Stem-loop(if miRNA)	--                C      A        -       U                         G                  AACGAA  A    U  AG   AAACGUAGAUUACUGA AAAACC AUUCUAUA CCCCUAG CUAUUUUGCGAGACGAAUCUAAUGA GUAUAUUAAUCUAUGAUU      UG UUAC GU  C   |||||||||||||||| |||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||      || |||| ||   UUUGCAUCUAAUGACU UUUUGG UAAGGUAU GGGGAUC GAUAAAACGCUCUGCUUAGAUUGCU CAUAUAAUUAGGUACUAA      AC GAUG CA  A AA                A      A        U       C                         A                  ------  -    U  CU
Stem-loop sequence	AAACGUAGAUUACUGACAAAACCAAUUCUAUACCCCUAGUCUAUUUUGCGAGACGAAUCUAAUGAGGUAUAUUAAUCUAUGAUUAACGAAUGAUUACUGUAGCAUCACUGUAGCAAAUCAUGGAUUAAUAUACAUCGUUAGAUUCGUCUCGCAAAAUAGCCUAGGGGUUAUGGAAUAGGUUUUAUCAGUAAUCUACGUUUAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015781418.1	ncRNA:24   ACCAAAACAGUCAUUAGAUGCAAA   1   *||||||*|||||||||||=|||| targets:1306   AGGUUUUAUCAGUAAUCUAUGUUU   1329 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group serine/arginine repetitive matrix protein 1 (LOC4335446), mRNA	serine/arginine repetitive matrix protein 1(LOC4335446)	coding protein	psRNATarget
AK107263.1	ncRNA:24   ACCAAAACAGUCAUUAGAUGCAAA   1   *||||||*|||||||||||=|||| targets:1217   AGGUUUUAUCAGUAAUCUAUGUUU   1240 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-125-H03, full insert sequence	NA	coding protein	psRNATarget
XM_015766387.1	ncRNA:24   ACCAAAACAGUCAUUAGAUGCAAA   1   |*|||||||=|*|||||||||||| targets:22   UUGUUUUGUUAUUAAUCUACGUUU   45 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325753 (LOC4325753), mRNA	uncharacterized LOC4325753(LOC4325753)	coding protein	psRNATarget
XM_015762321.1	ncRNA:24   ACC------AAAACAGUCAUUAGAUGCAAA   1   |||------||||*|||||||||||||||| targets:1104   UGGAAUGAAUUUUAUCAGUAAUCUACGUUU   1133 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group transcription initiation factor TFIID subunit 13 (LOC9268703), mRNA	transcription initiation factor TFIID subunit 13(LOC9268703)	coding protein	psRNATarget
AK240978.1	ncRNA:24   ACCAAAACAGUCAUUAGAUGCAAA   1   |*|||||||*|||||||||=|||| targets:541   UAGUUUUGUAAGUAAUCUAUGUUU   564 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J065048J02, full insert sequence	NA	coding protein	psRNATarget