Search result

BaseInfo

ncRNA ID	novel_osa_miR2053
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:14010274-14010454 [-]
Reference genome	IRGSP-1.0
Source	SRR1849766;SRR1849767;SRR1849768;SRR1849771;SRR1849773;SRR2040380;SRR2040381;SRR2040383;SRR2040385;SRR2040389;SRR2040391;SRR2040395;SRR2040396;SRR2040397;SRR2040398;SRR2040399;SRR2040401;SRR2040403;SRR2040406;SRR2040407;SRR2040410;SRR1738211
Length	24
Mature sequence(if miRNA)	1 - AAACGUUGUAAGUAAAAACUCAAA - 24
Stem-loop(if miRNA)	--UC                      C       C        UUU       C    AUAAAAAACGAAAAG     CUUAA   -  CG  G     AGUUUUUGCUUACAACGUUUGA CACUCGU UUAUUCAA   UUUUUUG AAAU               UUGUG     AGU AC  UA A     |||||||||||||||||||||| ||||||| ||||||||   ||||||| ||||               |||||     ||| ||  || U     UCAAAAAUGAAUGUUGCAAACU GUGAGCA AAUAAGUU   AAAAAAC UUUA               AACAC     UCA UG  AU A AAAC                      A       U        -UU       -    AUAAUUAAUAAAAUA     -----   A  AA  A
Stem-loop sequence	UCAGUUUUUGCUUACAACGUUUGACCACUCGUCUUAUUCAAUUUUUUUUUGCAAAUAUAAAAAACGAAAAGUUGUGCUUAAAGUACCGUAGAUAAUAAAGUAACUCACAAAUAAAAUAAUUAAUAAUUUCAAAAAAUUUUGAAUAAUACGAGUGAUCAAACGUUGUAAGUAAAAACUCAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK289013.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3847   UUUGAGUUUUUACUUGCAACGUUU   3870 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090089J03, full insert sequence	NA	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||||||=|||||||| targets:3902   UUUGAGUUUUUACUUGCAACGUUU   3925 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||||||||=|||||||||||| targets:2835   UUUGAGUUUUUGCUUACAACGUUU   2858 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288652.1	ncRNA:24   AAACUCAAAAAUGAAUGUUGCAAA   1   |||||*||||||||||||||*||| targets:1195   UUUGAAUUUUUACUUACAACAUUU   1218 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090056N01, full insert sequence	NA	coding protein	psRNATarget