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BaseInfo

ncRNA ID	novel_osa_miR2052
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:14616301-14616355 [+]
Reference genome	IRGSP-1.0
Source	SRR1849766
Length	24
Mature sequence(if miRNA)	1 - AAUAUGAUUUUCGCAGGUGGAACC - 24
Stem-loop(if miRNA)	--A         UC C       A  UU    AUAUGAUUU  G AGGUGGA CC  A    |||||||||  | ||||||| ||    UAUACUAAA  C UCCACCU GG  U GUA         GA A       -  UG
Stem-loop sequence	AAUAUGAUUUUCGCAGGUGGAACCUUAUGUGGUCCACCUACAGAAAUCAUAUAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK110535.1	ncRNA:24   CCAAGGUGGACGCUUUUAGUAUAA   1   ||||||=|||||*||||||||||| targets:793   GGUUCCGCCUGCAAAAAUCAUAUU   816 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-168-A08, full insert sequence	NA	coding protein	psRNATarget
AK288934.1	ncRNA:24   CCAA-------GGUGGACGCUUUUAGUAUAA   1   ||||-------||=||||||||||||||*|| targets:3382   GGUUAAGUCAACCGCCUGCGAAAAUCAUUUU   3412 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090082I21, full insert sequence	NA	coding protein	psRNATarget
AK100051.1	ncRNA:24   CCAAGGUGGACGCUUUUAGUAUAA   1   *||*==||||*||||||||||||| targets:529   AGUCUUACCUCCGAAAAUCAUAUU   552 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013155O14, full insert sequence	NA	coding protein	psRNATarget
AK100044.1	ncRNA:24   CCAAGGUGGACGCUUUUAGUAUAA   1   *||*==||||*||||||||||||| targets:527   AGUCUUACCUCCGAAAAUCAUAUU   550 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013153K21, full insert sequence	NA	coding protein	psRNATarget
XM_015764415.1	ncRNA:24   CCAAGGUGGACGCUUUUAGUAUAA   1   *||*==||||*||||||||||||| targets:524   AGUCUUACCUCCGAAAAUCAUAUU   547 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cyclin-T1-4 (LOC4352229), transcript variant X2, mRNA	cyclin-T1-4(LOC4352229)	coding protein	psRNATarget
XM_015764414.1	ncRNA:24   CCAAGGUGGACGCUUUUAGUAUAA   1   *||*==||||*||||||||||||| targets:534   AGUCUUACCUCCGAAAAUCAUAUU   557 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cyclin-T1-4 (LOC4352229), transcript variant X1, mRNA	cyclin-T1-4(LOC4352229)	coding protein	psRNATarget