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BaseInfo

ncRNA ID	novel_osa_miR2050
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:6011685-6011849 [+]
Reference genome	IRGSP-1.0
Source	SRR1849766
Length	24
Mature sequence(if miRNA)	142 - AAGGACCGUAGAAUUGCUCUAAAA - 165
Stem-loop(if miRNA)	--UA   U           A       G  A               UUU   C  U      -      ---            C     AGA CAAUUUUACGG CCUUGAG AG UACCAUGAGGUACCA   UUU UA UGUAAA UUUGGU   ACCUCGUGGUAC U     ||| ||||||||||| ||||||| || |||||||||||||||   ||| || |||||| ||||||   ||||||||||||     UCU GUUAAGAUGCC GGAACUC UC AUGGUACUCCAUGGU   AAA AU ACAUUU AAACCA   UGGAGUAUCAUG A AAAA   C           A       A  C               UUU   -  C      U      UGG            G
Stem-loop sequence	UAAGAUCAAUUUUACGGACCUUGAGGAGAUACCAUGAGGUACCAUUUUUUCUAUUGUAAAUUUGGUACCUCGUGGUACCUAGGUACUAUGAGGUGGUACCAAAUUUUACACUAAAAUUUUGGUACCUCAUGGUACCUACUCAAGGACCGUAGAAUUGCUCUAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015779910.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   ||||||||=||||||||||||=|| targets:409   UUUUAGAGUAAUUCUACGGUCUUU   432 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group pEARLI1-like lipid transfer protein 1 (LOC9272463), mRNA	pEARLI1-like lipid transfer protein 1(LOC9272463)	coding protein	psRNATarget
XM_015757723.1	ncRNA:24   AAAA-----UCUCGUUAAGAUGCCAGGAA   1   ||||-----||||=||||||||||||=|| targets:413   UUUUGAUGGAGAGUAAUUCUACGGUCUUU   441 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group TD and POZ domain-containing protein 4 (LOC9271695), mRNA	TD and POZ domain-containing protein 4(LOC9271695)	coding protein	psRNATarget
AK072846.1	ncRNA:24   AAAA----UCUCGUUAAGAUGCCAGGAA   1   ||*|----|||||||||||||||||||| targets:1676   UUCUGAAAAGAGCAAUUCUACGGUCCUU   1703 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J023143D15, full insert sequence	NA	coding protein	psRNATarget
XM_015790029.1	ncRNA:24   AAAA----UCUCGUUAAGAUGCCAGGAA   1   ||*|----|||||||||||||||||||| targets:2057   UUCUGAAAAGAGCAAUUCUACGGUCCUU   2084 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X1, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015790030.1	ncRNA:24   AAAA----UCUCGUUAAGAUGCCAGGAA   1   ||*|----|||||||||||||||||||| targets:2101   UUCUGAAAAGAGCAAUUCUACGGUCCUU   2128 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4342289 (LOC4342289), transcript variant X2, mRNA	uncharacterized LOC4342289(LOC4342289)	coding protein	psRNATarget
XM_015791346.1	ncRNA:24   AAAA-------UCUCGUUAAGAUGCCAGGAA   1   ||||-------||||=||||=|||||||||| targets:2390   UUUUGUAAUAGAGAGUAAUUUUACGGUCCUU   2420 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group cysteine-rich receptor-like protein kinase 10 (LOC4343479), mRNA	cysteine-rich receptor-like protein kinase 10(LOC4343479)	coding protein	psRNATarget
XM_015786627.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   *|||-|||||||||||=||||||| targets:531   CUUU-GAGCAAUUCUAUGGUCCUU   553 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281210 (LOC107281210), mRNA	uncharacterized LOC107281210(LOC107281210)	coding protein	psRNATarget
AK105471.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   ****|||||||||||||||||||| targets:1220   AAAAAGAGCAAUUCUACGGUCCUU   1243 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:001-127-A01, full insert sequence	NA	coding protein	psRNATarget
XM_015765620.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   ****|||||||||||||||||||| targets:1228   AAAAAGAGCAAUUCUACGGUCCUU   1251 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X1, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
XM_015765621.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   ****|||||||||||||||||||| targets:1246   AAAAAGAGCAAUUCUACGGUCCUU   1269 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 (LOC4324919), transcript variant X3, mRNA	probably inactive leucine-rich repeat receptor-like protein kinase At5g48380(LOC4324919)	coding protein	psRNATarget
AK288305.1	ncRNA:24   AA--AAUCUCGUUAAGAUGCCAGGAA   1   ||--||||||*||||=|||||||||| targets:3828   UUCAUUAGAGGAAUUUUACGGUCCUU   3853 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK120153.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   **|*||||*||||=|||||||||| targets:584   ACUAAGAGAAAUUUUACGGUCCUU   607 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013029P18, full insert sequence	NA	coding protein	psRNATarget
AK107326.1	ncRNA:24   AAAAUCUCGUUAAGAUGCCAGGAA   1   *****|||||=|||||||*||||| targets:1422   CCGGCGAGCAGUUCUACGCUCCUU   1445 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-126-E11, full insert sequence	NA	coding protein	psRNATarget