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BaseInfo

ncRNA ID	novel_osa_miR2049
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:6826926-6827095 [-]
Reference genome	IRGSP-1.0
Source	SRR1849766;SRR1849769;SRR1849770;SRR1849771;SRR1849778;SRR1849779;SRR1849781;SRR2040380;SRR2040382;SRR2040383;SRR2040388;SRR2040392;SRR2040393;SRR2040396;SRR2040397;SRR2040399;SRR2040401;SRR2040405;SRR2040406;SRR2040407;SRR2040408;SRR2040409;SRR2857729;SRR1738211
Length	24
Mature sequence(if miRNA)	147 - GUUUUCGCACCCAACUUUGAUCGU - 170
Stem-loop(if miRNA)	--G          C  C          --CG        AUUUUUUCUA      AU UUUGUUGUUAUGUGAUGAUAAAAUAUGAAUAG    UUUUCGCACC AA UUUGAUCGUC    UUAUUUGA          AUUAGU  U                                U    |||||||||| || ||||||||||    ||||||||          ||||||  |    AAAGGCGUGG UU AAACUGGCAG    AAUAAACU          AAAAAU  U                                A UCA          A  A          AUAG        ------GUUA      -- UUUUGUUAAUUUUUGUAAUCAGUGCUCAUUUC
Stem-loop sequence	GUUUUCGCACCCAACUUUGAUCGUCCGUUAUUUGAAUUUUUUCUAAUUAGUAUUUUUGUUGUUAUGUGAUGAUAAAAUAUGAAUAGUACUUUACUCGUGACUAAUGUUUUUAAUUGUUUUUUAAAAAAUUGUCAAAUAAGAUAGACGGUCAAAAUUAGGUGCGGAAAACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EF575786.1	ncRNA:24   UGCUAGUUUCAACCCACGCUUUUG   1   ||||*|||||||||||||*||||= targets:240   ACGACCAAAGUUGGGUGCUAAAAU   263 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) clone OSE-97-192-C12 unknown mRNA	NA	coding protein	psRNATarget
AK105921.1	ncRNA:24   UGCUAGUUUCAACCCACGCUUUUG   1   ||||*|||||||||||||*||||= targets:1204   ACGACCAAAGUUGGGUGCUAAAAU   1227 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-205-A04, full insert sequence	NA	coding protein	psRNATarget
AK060682.1	ncRNA:24   UGCUAGUUUCAACCCACGCUUUUG   1   ||||*|||||||||||||*||||= targets:1329   ACGACCAAAGUUGGGUGCUAAAAU   1352 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-029-E10, full insert sequence	NA	coding protein	psRNATarget
XM_015766935.1	ncRNA:24   UGCUAGUUUCAACCCACGCUUUUG   1   ||||*|||||||||||||*||||= targets:1332   ACGACCAAAGUUGGGUGCUAAAAU   1355 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325311 (LOC4325311), mRNA	uncharacterized LOC4325311(LOC4325311)	coding protein	psRNATarget
AK072500.1	ncRNA:24   UGCUAGUUUCAACCCACGCUUUUG   1   ||||*|||||||||||||*||||= targets:1333   ACGACCAAAGUUGGGUGCUAAAAU   1356 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023127H12, full insert sequence	NA	coding protein	psRNATarget