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BaseInfo

ncRNA ID	novel_osa_miR2041
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:5672880-5672965 [+]
Reference genome	IRGSP-1.0
Source	SRR1849766;SRR1849771;SRR1849775;SRR2040385;SRR2040390;SRR2040391;SRR2040402;SRR2040403;SRR2040407;SRR2040409;SRR2040411;SRR1738211
Length	24
Mature sequence(if miRNA)	1 - UUUGGAUUGAAGUCAAAAUAGCCU - 24
Stem-loop(if miRNA)	--     A           --A    CUA  UUUACUAUUGAAA   UUUGG UUGAAGUCAAA   UAGC   AG             U   ||||| |||||||||||   ||||   ||             G   AAACC AACUUCGGUUU   AUCG   CA             G AU     A           AAA    -UA  GAUUCUUUUAUCU
Stem-loop sequence	UUUGGAUUGAAGUCAAAAUAGCCUAAGUUUACUAUUGAAAUGGUCUAUUUUCUUAGACAUGCUAAAAUUUGGCUUCAAACCAAAUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK108595.1	ncRNA:24   UCCGAUAAAACUGAAGUUAGGUUU   1   |||||||||||=|||||||||||| targets:723   AGGCUAUUUUGGCUUCAAUCCAAA   746 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-146-D12, full insert sequence	NA	coding protein	psRNATarget
XM_015791299.1	ncRNA:24   UCCGAUAAAACUGAAGUUAGGUUU   1   |||||||||||=|||||||||||| targets:838   AGGCUAUUUUGGCUUCAAUCCAAA   861 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4325522 (LOC4325522), mRNA	uncharacterized LOC4325522(LOC4325522)	coding protein	psRNATarget
XM_015764425.1	ncRNA:24   UCCGAUAAAACUGAAGUUAGGUUU   1   |||||||||||=|||||||||||| targets:682   AGGCUAUUUUGGCUUCAAUCCAAA   705 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X2, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
XM_015764426.1	ncRNA:24   UCCGAUAAAACUGAAGUUAGGUUU   1   |||||||||||=|||||||||||| targets:677   AGGCUAUUUUGGCUUCAAUCCAAA   700 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system (LOC4351341), transcript variant X3, mRNA	dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system(LOC4351341)	coding protein	psRNATarget
XM_015762370.1	ncRNA:24   UCCGAUAAAACUGAAGUUAGGUUU   1   ||||||||||*=|||||||||||| targets:1325   AGGCUAUUUUAGCUUCAAUCCAAA   1348 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group putative serine/threonine-protein kinase-like protein CCR3 (LOC107279537), mRNA	putative serine/threonine-protein kinase-like protein CCR3(LOC107279537)	coding protein	psRNATarget
XM_015792823.1	ncRNA:24   UCC---GAUAAAACUGAAGUUAGGUUU   1   |||---|*=|||||=|||||||||||| targets:1032   AGGGCACAGUUUUGGCUUCAAUCCAAA   1058 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At4g14096 (LOC4344881), transcript variant X3, mRNA	F-box/LRR-repeat protein At4g14096(LOC4344881)	coding protein	psRNATarget
AK068342.1	ncRNA:24   UCC---GAUAAAACUGAAGUUAGGUUU   1   |||---|*=|||||=|||||||||||| targets:1296   AGGGCACAGUUUUGGCUUCAAUCCAAA   1322 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013151I04, full insert sequence	NA	coding protein	psRNATarget
XM_015792821.1	ncRNA:24   UCC---GAUAAAACUGAAGUUAGGUUU   1   |||---|*=|||||=|||||||||||| targets:1424   AGGGCACAGUUUUGGCUUCAAUCCAAA   1450 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At4g14096 (LOC4344881), transcript variant X1, mRNA	F-box/LRR-repeat protein At4g14096(LOC4344881)	coding protein	psRNATarget
AK120214.1	ncRNA:24   UCCGAUAAA--ACUGAAGUUAGGUUU   1   |****||||--||||||||||||||| targets:4678   AUAAAAUUUCUUGACUUCAAUCCAAA   4703 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013040G08, full insert sequence	NA	coding protein	psRNATarget