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BaseInfo

ncRNA ID	novel_osa_miR2040
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:13091562-13091636 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2098560;SRR1556014
Length	24
Mature sequence(if miRNA)	52 - ACCGGGACUAAAGAUGGAUUUUUA - 75
Stem-loop(if miRNA)	--A                 --         C AAUUA    CCGGGACUAAAGAUGGA  UUUUUAGUC C     U    |||||||||||||||||  ||||||||| |     U    GGCCCUGAUUUCUACCU  AGAAAUCAG G     U UUA                 AU         A CCCGC
Stem-loop sequence	ACCGGGACUAAAGAUGGAUUUUUAGUCCCAAUUAUUUCGCCCGAGACUAAAGAUAUCCAUCUUUAGUCCCGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288424.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   |||||||||||||||||*|||||| targets:1361   UAAAAAUCCAUCUUUAGCCCCGGU   1384 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK288424.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||=|||=||=|||||||||||| targets:2281   UAAAGAUCUAUUUUUAGUCCCGGU   2304 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090032J12, full insert sequence	NA	coding protein	psRNATarget
AK065811.1	ncRNA:24   AUUUUUA--GGUAGAAAUCAGGGCCA   1   ||||=||--||||||||||||||||| targets:1862   UAAAGAUGCCCAUCUUUAGUCCCGGU   1887 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013039F07, full insert sequence	NA	coding protein	psRNATarget
AK066662.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   |||||||*=||||||||||||||| targets:647   UAAAAAUGUAUCUUUAGUCCCGGU   670 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013071A17, full insert sequence	NA	coding protein	psRNATarget
AK288796.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||=|||*||||||||||||||| targets:1822   UAAAGAUCGAUCUUUAGUCCCGGU   1845 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
AK242216.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   |=|*||*||**||||||||||||| targets:578   UGAUAACCCCCCUUUAGUCCCGGU   601 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA, clone: J075172F09, full insert sequence	NA	coding protein	psRNATarget
AK288438.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||=||||*|=|||||||||||| targets:2398   UAAAGAUCCUUUUUUAGUCCCGGU   2421 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090034C21, full insert sequence	NA	coding protein	psRNATarget
AK288167.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||=|||*||||||||||||||* targets:1775   UAAAGAUCGAUCUUUAGUCCCGGA   1798 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090002K22, full insert sequence	NA	coding protein	psRNATarget
AK105552.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   |||||||**||||||||||||||| targets:1265   UAAAAAUAGAUCUUUAGUCCCGGU   1288 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:001-128-A12, full insert sequence	NA	coding protein	psRNATarget
XM_015759969.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||==*=|||||||||||||||| targets:1863   UAAAGGAUCAUCUUUAGUCCCGGU   1886 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X3, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
XM_015759968.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||==*=|||||||||||||||| targets:3361   UAAAGGAUCAUCUUUAGUCCCGGU   3384 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group F-box/LRR-repeat protein At3g58930 (LOC9269963), transcript variant X1, mRNA	F-box/LRR-repeat protein At3g58930(LOC9269963)	coding protein	psRNATarget
AK288463.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||||=||**||||||||||||||| targets:635   UAAAGAUGGAUCUUUAGUCCCGGU   658 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090036E20, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||*||||**||||||||||||||| targets:139   UAUAAAUAGAUCUUUAGUCCCGGU   162 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
AK289098.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   ||*||||**||||||||||||||| targets:230   UACAAAUAGAUCUUUAGUCCCGGU   253 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090096E23, full insert sequence	NA	coding protein	psRNATarget
XM_015790121.1	ncRNA:24   AUUUUUAGGUAGAAAUCAGGGCCA   1   |*****|=*||||||||||||||| targets:921   UUUUUUUUAAUCUUUAGUCCCGGU   944 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group putative disease resistance protein RGA4 (LOC107281518), transcript variant X2, mRNA	putative disease resistance protein RGA4(LOC107281518)	coding protein	psRNATarget