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BaseInfo

ncRNA ID ath-miR863-5p
Species Arabidopsis thaliana
Class miRNA
Genome position chr4:7846597-7846899 [+]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 48 - UUAUGUCUUGUUGAUCUCAAU - 68
Stem-loop(if miRNA)    AUAAG                       GGGG           C             A       A      A  C                       A        U              GAA       AACA      ---     A
CUC     AUGUAGAAACUAGAGAAGAGUUU    GAAAACUCUUU UUAUGUCUUGUUG UCUCAAU GCAUUG UA AAUGUAUAUAUAUGCAAUUUAGA UAUGUUUU CCUAAUUUGAAUAA   AUAGAUA    UGAAUA   AGUAU U
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GAG     UACAUCUUUGAUCUUUUUUCAAA    CUUUUGAGAAA AAUACAGAACAAC AGAGUUA CGUAAC AU UUGUAUAUAUAUAUGUUGGAUCU AUACAAAG GGAUUAAACUUAUU   UAUUUAU    AUUUAU   UUAUA A
   GAGAA                       --AG           U             G       G      C  A                       A        U              ---       -AAG      CCU     U
Stem-loop sequence CUCAUAAGAUGUAGAAACUAGAGAAGAGUUUGGGGGAAAACUCUUUCUUAUGUCUUGUUGAUCUCAAUAGCAUUGAUACAAUGUAUAUAUAUGCAAUUUAGAAUAUGUUUUUCCUAAUUUGAAUAAGAAAUAGAUAAACAUGAAUAAGUAUAUAUAUAUUUCCUAUUUAGAAUAUUUAUUUAUUCAAAUUAGGUGAAACAUAAUCUAGGUUGUAUAUAUAUAUGUUAUACCAAUGCGAUUGAGAGCAACAAGACAUAAUAAAGAGUUUUCGAAAACUUUUUUCUAGUUUCUACAUAAGAGGAG

Reference

1 PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes";
Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC;
PLoS One. 2:e219(2007).