ncRNA ID | ath-miR863-5p |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr4:7846597-7846899 [+] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 48 - UUAUGUCUUGUUGAUCUCAAU - 68 |
Stem-loop(if miRNA) |
   AUAAG                       GGGG           C             A       A      A  C                       A        U              GAA       AACA      ---     A CUC     AUGUAGAAACUAGAGAAGAGUUU    GAAAACUCUUU UUAUGUCUUGUUG UCUCAAU GCAUUG UA AAUGUAUAUAUAUGCAAUUUAGA UAUGUUUU CCUAAUUUGAAUAA   AUAGAUA    UGAAUA   AGUAU U |||     |||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||| |||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||   |||||||    ||||||   ||||| GAG     UACAUCUUUGAUCUUUUUUCAAA    CUUUUGAGAAA AAUACAGAACAAC AGAGUUA CGUAAC AU UUGUAUAUAUAUAUGUUGGAUCU AUACAAAG GGAUUAAACUUAUU   UAUUUAU    AUUUAU   UUAUA A    GAGAA                       --AG           U             G       G      C  A                       A        U              ---       -AAG      CCU     U |
Stem-loop sequence | CUCAUAAGAUGUAGAAACUAGAGAAGAGUUUGGGGGAAAACUCUUUCUUAUGUCUUGUUGAUCUCAAUAGCAUUGAUACAAUGUAUAUAUAUGCAAUUUAGAAUAUGUUUUUCCUAAUUUGAAUAAGAAAUAGAUAAACAUGAAUAAGUAUAUAUAUAUUUCCUAUUUAGAAUAUUUAUUUAUUCAAAUUAGGUGAAACAUAAUCUAGGUUGUAUAUAUAUAUGUUAUACCAAUGCGAUUGAGAGCAACAAGACAUAAUAAAGAGUUUUCGAAAACUUUUUUCUAGUUUCUACAUAAGAGGAG |
1 | PMID:17299599
"High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007). |