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BaseInfo

ncRNA ID	novel_osa_miR2038
Species	Oryza sativa
Class	miRNA
Genome position	Chr5:7382429-7382514 [+]
Reference genome	IRGSP-1.0
Source	SRR1849766;SRR1849774;SRR2040394;SRR2040396;SRR2040409
Length	19
Mature sequence(if miRNA)	1 - UACCGGAUGUGACAUAUUC - 19
Stem-loop(if miRNA)	--   CG             C  A     C        A  UA   UAC  GAUGUGACAUAUU UA UACAA GAAUUUAG CA  U   |||  ||||||||||||| || ||||| |||||||| ||   AUG  CUACACUGUAUAA AU AUGUU CUUAGAUC GU  A UU   AU             A  C     A        C  CU
Stem-loop sequence	UACCGGAUGUGACAUAUUCUAAUACAACGAAUUUAGACAUAUAUCUGCCUAGAUUCAUUGUACUAAAAUAUGUCACAUCUAGUAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK287908.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   ||||=|||||||||||||| targets:1271   GAAUGUGUCACAUCCGGUA   1289 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J065212K06, full insert sequence	NA	coding protein	psRNATarget
CT829763.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   *=||||||||||||||||| targets:1023   AGAUAUGUCACAUCCGGUA   1041 Target Full Sequence	2.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105M10, full insert sequence	NA	coding protein	psRNATarget
AK066512.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   *=||||||||||||||||| targets:1027   AGAUAUGUCACAUCCGGUA   1045 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J013068C19, full insert sequence	NA	coding protein	psRNATarget
HI404281.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:54   GAAUAUGUCACAUCCAGUA   72 Target Full Sequence	1.5	Sequence 2406 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236411.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:54   GAAUAUGUCACAUCCAGUA   72 Target Full Sequence	1.5	Sequence 2406 from Patent EP2985353	NA	coding protein	psRNATarget
JB164742.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:54   GAAUAUGUCACAUCCAGUA   72 Target Full Sequence	1.5	Sequence 2406 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236097.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:75   GAAUAUGUCACAUCCAGUA   93 Target Full Sequence	1.5	Sequence 2092 from Patent EP2985353	NA	coding protein	psRNATarget
JB164428.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:75   GAAUAUGUCACAUCCAGUA   93 Target Full Sequence	1.5	Sequence 2092 from Patent EP2559767	NA	coding protein	psRNATarget
JB164341.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:75   GAAUAUGUCACAUCCAGUA   93 Target Full Sequence	1.5	Sequence 2005 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236010.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:75   GAAUAUGUCACAUCCAGUA   93 Target Full Sequence	1.5	Sequence 2005 from Patent EP2985353	NA	coding protein	psRNATarget
HI403967.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:75   GAAUAUGUCACAUCCAGUA   93 Target Full Sequence	1.5	Sequence 2092 from Patent EP2074227	NA	coding protein	psRNATarget
HI403880.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||| targets:75   GAAUAUGUCACAUCCAGUA   93 Target Full Sequence	1.5	Sequence 2005 from Patent EP2074227	NA	coding protein	psRNATarget
XM_015787270.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |=||=|||||||||||||* targets:5931   GGAUGUGUCACAUCCGGUC   5949 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4341670 (LOC4341670), transcript variant X1, mRNA	uncharacterized LOC4341670(Os06g0647801)	coding protein	psRNATarget
AK288458.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   ||||=||||||||||*||| targets:1376   GAAUGUGUCACAUCCAGUA   1394 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090035E13, full insert sequence	NA	coding protein	psRNATarget
AK061182.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||* targets:892   GAAUAUGUCACAUCCAGUC   910 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:006-209-D09, full insert sequence	NA	coding protein	psRNATarget
XM_015759388.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||* targets:468   GAAUAUGUCACAUCCAGUC   486 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group ent-cassadiene C2-hydroxylase-like (LOC4348721), transcript variant X2, mRNA	ent-cassadiene C2-hydroxylase-like(LOC4348721)	coding protein	psRNATarget
AK288796.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   |||||||||||||||*||* targets:611   GAAUAUGUCACAUCCAGUU   629 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090070F05, full insert sequence	NA	coding protein	psRNATarget
XM_015783613.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   *||||||||||||||*||| targets:676   AAAUAUGUCACAUCCAGUA   694 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4339531 (LOC4339531), mRNA	uncharacterized LOC4339531(LOC4339531)	coding protein	psRNATarget
JB164266.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   *||*=|||||||||||||| targets:66   UAAAGUGUCACAUCCGGUA   84 Target Full Sequence	3.0	Sequence 1930 from Patent EP2559767	NA	coding protein	psRNATarget
HI403805.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   *||*=|||||||||||||| targets:66   UAAAGUGUCACAUCCGGUA   84 Target Full Sequence	3.0	Sequence 1930 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235935.1	ncRNA:19   CUUAUACAGUGUAGGCCAU   1   *||*=|||||||||||||| targets:66   UAAAGUGUCACAUCCGGUA   84 Target Full Sequence	3.0	Sequence 1930 from Patent EP2985353	NA	coding protein	psRNATarget