Search result

BaseInfo

ncRNA ID novel_osa_miR2035
Species Oryza sativa
Class miRNA
Genome position Chr10:10219235-10219418 [-]
Reference genome IRGSP-1.0
Source SRR1849766
Length 24
Mature sequence(if miRNA) 161 - ACUUGGAAACUAUCGUUGGAUCGA - 184
Stem-loop(if miRNA) --                             A       AAA                  A                G ----------A      C
  ACUUGGAAACUAUCGUUGGAUCGAGAAAU GACGUCC   AUUCGUCCAUGUCACCAU AGUUAAAAUUUAACUC C           GAUUCA U
  ||||||||||||||||||||||||||||| |||||||   |||||||||||||||||| |||||||||||||||| |           ||||||
  UGAACCUUUGAUGGCAACCUAGCUCUUUA CUGCAGG   UAAGCAGGUGUAGUGGUA UCAAUUUUAAGUUGAG G           UUGAGU C
UU                             C       CUC                  C                G CCAUUUUAAAA      A
Stem-loop sequence ACUUGGAAACUAUCGUUGGAUCGAGAAAUAGACGUCCAAAAUUCGUCCAUGUCACCAUAAGUUAAAAUUUAACUCGCAGAUUCACUCAUGAGUUAAAAUUUUACCGGGAGUUGAAUUUUAACUCAUGGUGAUGUGGACGAAUCUCGGACGUCCAUUUCUCGAUCCAACGGUAGUUUCCAAGUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK288582.1
ncRNA:24   AGCUAGGUUGCUAUCAAAGGUUCA   1
  *|||||=||||=||||||||||||
targets:214   ACGAUCUAACGGUAGUUUCCAAGU   237

2.5 Oryza sativa Japonica Group cDNA, clone: J090049I19, full insert sequence NA coding protein psRNATarget
AK288232.1
ncRNA:24   AGCUAGGUUGCUAUCAAAGGUUCA   1
  |*||||||||*||||||||||=||
targets:741   UAGAUCCAACUAUAGUUUCCAGGU   764

2.5 Oryza sativa Japonica Group cDNA, clone: J090012P03, full insert sequence NA coding protein psRNATarget