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BaseInfo

ncRNA ID	novel_osa_miR2024
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:13986122-13986196 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2099745;SRR1556014;SRR1654490
Length	24
Mature sequence(if miRNA)	52 - AUAAGAGAUUUUAGUGGGAUGUGA - 75
Stem-loop(if miRNA)	--     A      A                         AUAAG GAUUUU GUGGGAUGUGACACAUCUUAAUC   ||||| |||||| ||||||||||||||||||||||C   UAUUC CUAAAA CACCCUACACUGUGUAGGAUUAA UA     C      C
Stem-loop sequence	AUAAGAGAUUUUAGUGGGAUGUGACACAUCUUAAUCCAAUUAGGAUGUGUCACAUCCCACCAAAAUCCCUUAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK068634.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=|||=|||||||||||||||| targets:958   UCAUAUCUCACUAAAAUCUCUUAU   981 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013157H05, full insert sequence	NA	coding protein	psRNATarget
AK068116.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=|||=|||||||||||||||| targets:960   UCAUAUCUCACUAAAAUCUCUUAU   983 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013135P04, full insert sequence	NA	coding protein	psRNATarget
XM_015769795.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=|||=|||||||||||||||| targets:1075   UCAUAUCUCACUAAAAUCUCUUAU   1098 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4329504 (LOC4329504), mRNA	uncharacterized LOC4329504(LOC4329504)	coding protein	psRNATarget
AK120405.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=|||=|||||||||||||||| targets:931   UCAUAUCUCACUAAAAUCUCUUAU   954 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013088P09, full insert sequence	NA	coding protein	psRNATarget
XM_015787746.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||||||||||*|||||||||||| targets:2308   UCACAUCCCACCAAAAUCUCUUAU   2331 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein ROOT PRIMORDIUM DEFECTIVE 1 (LOC4340709), mRNA	protein ROOT PRIMORDIUM DEFECTIVE 1(LOC4340709)	coding protein	psRNATarget
AK107726.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=||=|=*|||||||||||||| targets:502   UCAUAUUCUUCUAAAAUCUCUUAU   525 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:002-132-F02, full insert sequence	NA	coding protein	psRNATarget
XM_015794062.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=||=|=*|||||||||||||| targets:1100   UCAUAUUCUUCUAAAAUCUCUUAU   1123 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group transcription factor AIG1 (LOC4345836), mRNA	transcription factor AIG1(LOC4345836)	coding protein	psRNATarget
XM_015792363.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||||||||*||||||||*||||| targets:2089   UCACAUCCCUCUAAAAUCCCUUAU   2112 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein RFT1 homolog (LOC4343254), transcript variant X2, mRNA	protein RFT1 homolog(LOC4343254)	coding protein	psRNATarget
XM_015792362.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||||||||*||||||||*||||| targets:2206   UCACAUCCCUCUAAAAUCCCUUAU   2229 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group protein RFT1 homolog (LOC4343254), transcript variant X1, mRNA	protein RFT1 homolog(LOC4343254)	coding protein	psRNATarget
AK288180.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||||||||*||||||||*||||| targets:1340   UCACAUCCCUCUAAAAUCCCUUAU   1363 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090005C24, full insert sequence	NA	coding protein	psRNATarget
AK069433.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   |||=||||**|||||||||||||| targets:370   UCAUAUCCACCUAAAAUCUCUUAU   393 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:J023025M19, full insert sequence	NA	coding protein	psRNATarget
HI404101.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   ||-=||||*||||||||=|||||| targets:82   UC-UAUCCAACUAAAAUUUCUUAU   104 Target Full Sequence	2.5	Sequence 2226 from Patent EP2074227	NA	coding protein	psRNATarget
JB164562.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   ||-=||||*||||||||=|||||| targets:82   UC-UAUCCAACUAAAAUUUCUUAU   104 Target Full Sequence	2.5	Sequence 2226 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236231.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   ||-=||||*||||||||=|||||| targets:82   UC-UAUCCAACUAAAAUUUCUUAU   104 Target Full Sequence	2.5	Sequence 2226 from Patent EP2985353	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   ||*|||||**|||||||||||||| targets:1050   UCUCAUCCGUCUAAAAUCUCUUAU   1073 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget
AK288305.1	ncRNA:24   AGUGUAGGGUGAUUUUAGAGAAUA   1   ||*|||||**|||||||||||||| targets:1381   UCUCAUCCGUCUAAAAUCUCUUAU   1404 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090020F20, full insert sequence	NA	coding protein	psRNATarget