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BaseInfo

ncRNA ID	novel_osa_miR2023
Species	Oryza sativa
Class	miRNA
Genome position	Chr12:16345701-16345779 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849767;SRR1849769;SRR1849770;SRR1555746;SRR1849771;SRR1849773;SRR1849776;SRR2040382;SRR2040383;SRR2040384;SRR2040385;SRR2040386;SRR2040387;SRR2040388;SRR2040389;SRR2040394;SRR2040395;SRR2040396;SRR2040397;SRR2040399;SRR2040400;SRR2040401;SRR2040403;SRR2040405;SRR2040407;SRR2040409;SRR2040410;SRR2040411;SRR2097778;SRR2097779;SRR1555749;SRR1298766;SRR2857731;SRR2857732;SRR2857734;SRR2857735;SRR2857736;SRR1556014;SRR1556016;SRR1612403
Length	24
Mature sequence(if miRNA)	56 - UUUACUCGUGAUGACGUGGACAAA - 79
Stem-loop(if miRNA)	--C          C    -      U   A    -AU  G    GUCCACGUCA CAUG GUAAAA UUU ACUC   GA U    |||||||||| |||| |||||| ||| ||||   || A    CAGGUGCAGU GUGC CAUUUU GAA UGAG   CU A AAA          A    U      U   A    CGU  A
Stem-loop sequence	CGUCCACGUCACCAUGGUAAAAUUUUAACUCAUGAGUAAAUCUGCGAGUAAAGUUUUUACUCGUGAUGACGUGGACAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT835866.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   |||||=|||||||||||||||||| targets:200   UUUGUUCACGUCAUCACGAGUAAA   223 Target Full Sequence	1.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI027A04, full insert sequence	NA	coding protein	psRNATarget
AK243022.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   |||||=|||||||||||||||||| targets:1331   UUUGUUCACGUCAUCACGAGUAAA   1354 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA, clone: J100001E20, full insert sequence	NA	coding protein	psRNATarget
XM_015755327.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   |||||=|||||||||||||||||| targets:1495   UUUGUUCACGUCAUCACGAGUAAA   1518 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group probable cinnamyl alcohol dehydrogenase 8D (LOC4346993), mRNA	probable cinnamyl alcohol dehydrogenase 8D(LOC4346993)	coding protein	psRNATarget
XM_015790977.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||||||||=||||||||||||||| targets:3280   UUUGUCCAUGUCAUCACGAGUAAA   3303 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X3, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
XM_015790976.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||||||||=||||||||||||||| targets:3627   UUUGUCCAUGUCAUCACGAGUAAA   3650 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4344388 (LOC4344388), transcript variant X2, mRNA	uncharacterized LOC4344388(LOC4344388)	coding protein	psRNATarget
AK072439.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||||||||=|||||||=||||||| targets:1492   UUUGUCCAUGUCAUCAUGAGUAAA   1515 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023111C14, full insert sequence	NA	coding protein	psRNATarget
HI404532.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCA-UUU   1   |||||||||||||||||||||-||| targets:1   UUUGUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2657 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236662.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCA-UUU   1   |||||||||||||||||||||-||| targets:1   UUUGUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2657 from Patent EP2985353	NA	coding protein	psRNATarget
JB164993.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCA-UUU   1   |||||||||||||||||||||-||| targets:1   UUUGUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2657 from Patent EP2559767	NA	coding protein	psRNATarget
HI404362.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   |||||||||||||||||*|||||| targets:16   UUUGUCCACGUCAUCACAAGUAAA   39 Target Full Sequence	1.5	Sequence 2487 from Patent EP2074227	NA	coding protein	psRNATarget
JB164823.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   |||||||||||||||||*|||||| targets:16   UUUGUCCACGUCAUCACAAGUAAA   39 Target Full Sequence	1.5	Sequence 2487 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236492.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   |||||||||||||||||*|||||| targets:16   UUUGUCCACGUCAUCACAAGUAAA   39 Target Full Sequence	1.5	Sequence 2487 from Patent EP2985353	NA	coding protein	psRNATarget
HI404187.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCA-UUU   1   ||*||||||||||||||||||-||| targets:1   UUCGUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2312 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236317.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCA-UUU   1   ||*||||||||||||||||||-||| targets:1   UUCGUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2312 from Patent EP2985353	NA	coding protein	psRNATarget
JB164648.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCA-UUU   1   ||*||||||||||||||||||-||| targets:1   UUCGUCCACGUCAUCACGAGUUAAA   25 Target Full Sequence	3.0	Sequence 2312 from Patent EP2559767	NA	coding protein	psRNATarget
AK288868.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||**|=||=||||||||||||||| targets:5434   UUCAUUCAUGUCAUCACGAGUAAA   5457 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090078E01, full insert sequence	NA	coding protein	psRNATarget
HI404302.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||**||*||||||||||||||||| targets:18   UUCAUCAACGUCAUCACGAGUAAA   41 Target Full Sequence	1.0	Sequence 2427 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236432.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||**||*||||||||||||||||| targets:18   UUCAUCAACGUCAUCACGAGUAAA   41 Target Full Sequence	1.0	Sequence 2427 from Patent EP2985353	NA	coding protein	psRNATarget
JB164763.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||**||*||||||||||||||||| targets:18   UUCAUCAACGUCAUCACGAGUAAA   41 Target Full Sequence	1.0	Sequence 2427 from Patent EP2559767	NA	coding protein	psRNATarget
AK288313.1	ncRNA:24   AAACAGGUGCAGUAGUGCUCAUUU   1   ||**|||||||||||||*|||||| targets:3573   UUCAUCCACGUCAUCACAAGUAAA   3596 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090021D10, full insert sequence	NA	coding protein	psRNATarget