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BaseInfo

ncRNA ID	novel_osa_miR2020
Species	Oryza sativa
Class	miRNA
Genome position	Chr11:28180534-28180610 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR1556014
Length	24
Mature sequence(if miRNA)	54 - CCAAAUCAUUUUCGGUCGUUGGAU - 77
Stem-loop(if miRNA)	-C    -UC                 C    UGG  AA   CAAA   AUUUUCGGUCGUUGGAU UAGC   GC  G   ||||   ||||||||||||||||| ||||   ||  A   GUUU   UAAAAGCUAGCAACCUA AUCG   CG  U AU    UAA                 A    UUA  GG
Stem-loop sequence	CCAAAUCAUUUUCGGUCGUUGGAUCUAGCUGGGCAAGAUGGGCAUUGCUAAAUCCAACGAUCGAAAAUAAUUUUGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK100297.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   |||||||||=|||||||*|||||| targets:1357   AUCCAACGAUCGAAAAUAAUUUGG   1380 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence	NA	coding protein	psRNATarget
XM_015793616.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   |||||||||=|||||||*|||||| targets:1532   AUCCAACGAUCGAAAAUAAUUUGG   1555 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA	probable auxin efflux carrier component 4(LOC4346116)	coding protein	psRNATarget
CT833567.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   *|=||=*|||=||||||||||||| targets:897   CUUCAGGGACUGAAAAUGAUUUGG   920 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129K08, full insert sequence	NA	coding protein	psRNATarget
KM982775.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   *|=||=*|||=||||||||||||| targets:881   CUUCAGGGACUGAAAAUGAUUUGG   904 Target Full Sequence	3.0	Oryza sativa Japonica Group clone KCG160B08 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
AK120852.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   *|=||=*|||=||||||||||||| targets:895   CUUCAGGGACUGAAAAUGAUUUGG   918 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J023023N20, full insert sequence	NA	coding protein	psRNATarget
AK106087.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   *|=||=*|||=||||||||||||| targets:898   CUUCAGGGACUGAAAAUGAUUUGG   921 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:001-207-B04, full insert sequence	NA	coding protein	psRNATarget
XM_015778721.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   *|=||=*|||=||||||||||||| targets:924   CUUCAGGGACUGAAAAUGAUUUGG   947 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group momilactone A synthase (LOC4335093), mRNA	momilactone A synthase(LOC4335093)	coding protein	psRNATarget
AK103462.1	ncRNA:24   UAGGUUGCUGGCUUUUACUAAACC   1   *|=||=*|||=||||||||||||| targets:900   CUUCAGGGACUGAAAAUGAUUUGG   923 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J033129M10, full insert sequence	NA	coding protein	psRNATarget