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BaseInfo

ncRNA ID	novel_osa_miR2008
Species	Oryza sativa
Class	miRNA
Genome position	Chr9:2073010-2073147 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849772;SRR1849774;SRR2040396;SRR2857729;SRR2857732;SRR1612404
Length	21
Mature sequence(if miRNA)	118 - UUGUUGGAUGAAGAAAUGACC - 138
Stem-loop(if miRNA)	--       C              --GA  GA      -          UUAC        CUCC      U   UCAUUUC UCAUCCGACAAAGU    UG  AACAUU UUCACAAAAU    AUAUCUCU    AUAGUU A   ||||||| ||||||||||||||    ||  |||||| ||||||||||    ||||||||    |||||| U   AGUAAAG AGUAGGUUGUUUCA    AC  UUGUAA AAGUGUUUUA    UAUAGAGA    UAUCAA A CC       A              AUAG  -A      C          --CA        -AUA      A
Stem-loop sequence	UCAUUUCCUCAUCCGACAAAGUGAUGGAAACAUUUUCACAAAAUUUACAUAUCUCUCUCCAUAGUUUAUAAAACUAUAUAAGAGAUAUACAUUUUGUGAACAAUGUUACAGAUAACUUUGUUGGAUGAAGAAAUGACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
CT831299.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   ||||||||||||||||||=|| targets:791   GGUCAUUUCUUCAUCCAAUAA   811 Target Full Sequence	1.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA205E03, full insert sequence	NA	coding protein	psRNATarget
JB165025.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   |*||||||||||||||=|||| targets:2   GAUCAUUUCUUCAUCCGACAA   22 Target Full Sequence	1.5	Sequence 2689 from Patent EP2559767	NA	coding protein	psRNATarget
HI404564.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   |*||||||||||||||=|||| targets:2   GAUCAUUUCUUCAUCCGACAA   22 Target Full Sequence	1.5	Sequence 2689 from Patent EP2074227	NA	coding protein	psRNATarget
LQ236694.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   |*||||||||||||||=|||| targets:2   GAUCAUUUCUUCAUCCGACAA   22 Target Full Sequence	1.5	Sequence 2689 from Patent EP2985353	NA	coding protein	psRNATarget
AK072662.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   **|||||||*||||||||||* targets:498   UAUCAUUUCAUCAUCCAACAC   518 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023134C12, full insert sequence	NA	coding protein	psRNATarget
CT834432.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   **|||||||*||||||||||* targets:583   UAUCAUUUCAUCAUCCAACAC   603 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN125H13, full insert sequence	NA	coding protein	psRNATarget
XM_015790297.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   **|||||||*||||||||||* targets:596   UAUCAUUUCAUCAUCCAACAC   616 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group actin-depolymerizing factor 9 (LOC4343240), mRNA	actin-depolymerizing factor 9(LOC4343240)	coding protein	psRNATarget
AK288228.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   ***|||||||*|||||||||| targets:886   UUCCAUUUCUCCAUCCAACAA   906 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090012J22, full insert sequence	NA	coding protein	psRNATarget
AK066697.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   ***|||||||*|||||||||| targets:2860   UUCCAUUUCUCCAUCCAACAA   2880 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013073F17, full insert sequence	NA	coding protein	psRNATarget
XM_015795206.1	ncRNA:21   CCAGUAAAGAAGUAGGUUGUU   1   ***|||||||*|||||||||| targets:2895   UUCCAUUUCUCCAUCCAACAA   2915 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group uncharacterized protein ycf39 (LOC4346272), mRNA	uncharacterized protein ycf39(LOC4346272)	coding protein	psRNATarget