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BaseInfo

ncRNA ID	novel_osa_miR2007
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:5469652-5469764 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR2040407
Length	24
Mature sequence(if miRNA)	1 - GAUCGGCUAUAGAUGAAUUGGAGC - 24
Stem-loop(if miRNA)	--   C                           U          ---          A   GAU GGCUAUAGAUGAAUUGGAGCUAGUAGU GGCUGUAUUA   AACUUGCUCU A   ||| ||||||||||||||||||||||||||| ||||||||||   ||||||||||   CUA CCGAUAUCUAUUUAACCUCGAUCAUCA CCGAUAUGAU   UUGAACGAGA U AU   A                           C          AAC          A
Stem-loop sequence	GAUCGGCUAUAGAUGAAUUGGAGCUAGUAGUUGGCUGUAUUAAACUUGCUCUAAUAAGAGCAAGUUCAAUAGUAUAGCCCACUACUAGCUCCAAUUUAUCUAUAGCCAAUCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288203.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   ||||||||||||||||||||*||| targets:1167   GCUCCAAUUCAUCUAUAGCCAAUC   1190 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090008K12, full insert sequence	NA	coding protein	psRNATarget
AK106264.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   |||||||*|||||||||||||||* targets:1033   GCUCCAAAUCAUCUAUAGCCGAUG   1056 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA clone:002-100-F10, full insert sequence	NA	coding protein	psRNATarget
XM_015757236.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   |||||||*|||||||||||||||* targets:1466   GCUCCAAAUCAUCUAUAGCCGAUG   1489 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group protein STRICTOSIDINE SYNTHASE-LIKE 5 (LOC4349269), mRNA	protein STRICTOSIDINE SYNTHASE-LIKE 5(LOC4349269)	coding protein	psRNATarget
AK288219.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   *|||||||||||||||||||*||| targets:2850   UCUCCAAUUCAUCUAUAGCCAAUC   2873 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090011I18, full insert sequence	NA	coding protein	psRNATarget
AK100599.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   ||||=|||||||||||||||*||= targets:835   GCUCUAAUUCAUCUAUAGCCAAUU   858 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023107C05, full insert sequence	NA	coding protein	psRNATarget
AK119265.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   ||||=|||||||||||||||*||= targets:2575   GCUCUAAUUCAUCUAUAGCCAAUU   2598 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:001-130-A05, full insert sequence	NA	coding protein	psRNATarget
XM_015769816.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   |||=|||||=||||||||||*||| targets:783   GCUUCAAUUUAUCUAUAGCCAAUC   806 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X13, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
XM_015769808.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   |||=|||||=||||||||||*||| targets:780   GCUUCAAUUUAUCUAUAGCCAAUC   803 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X6, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
XM_015769815.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   |||=|||||=||||||||||*||| targets:783   GCUUCAAUUUAUCUAUAGCCAAUC   806 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X12, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
XM_015769806.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   |||=|||||=||||||||||*||| targets:779   GCUUCAAUUUAUCUAUAGCCAAUC   802 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group receptor-like serine/threonine-protein kinase NCRK (LOC4328043), transcript variant X4, mRNA	receptor-like serine/threonine-protein kinase NCRK(LOC4328043)	coding protein	psRNATarget
CT832928.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   *|||-||||=*||||||||||||= targets:420   UCUC-AAUUUCUCUAUAGCCGAUU   442 Target Full Sequence	3.0	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029C19, full insert sequence	NA	coding protein	psRNATarget
AK065526.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   *|||-||||=*||||||||||||= targets:1398   UCUC-AAUUUCUCUAUAGCCGAUU   1420 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013031H05, full insert sequence	NA	coding protein	psRNATarget
XM_015762515.1	ncRNA:24   CGAGGUUAAGUAGAUAUCGGCUAG   1   *|||-||||=*||||||||||||= targets:1615   UCUC-AAUUUCUCUAUAGCCGAUU   1637 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group probable polygalacturonase (LOC4351055), mRNA	probable polygalacturonase(LOC4351055)	coding protein	psRNATarget