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BaseInfo

ncRNA ID	novel_osa_miR2002
Species	Oryza sativa
Class	miRNA
Genome position	Chr1:14943360-14943446 [-]
Reference genome	IRGSP-1.0
Source	SRR1555746;SRR2097779;SRR1556014
Length	21
Mature sequence(if miRNA)	1 - AACCGCGGUUGUUCGACAGGG - 21
Stem-loop(if miRNA)	UGA  CAGUUCGACAUGUACUUGUCGAACUGUGGU CUGUCGAAC   CG                              U |||||||||   || GGGACAGCU   UG                              G          ---  UUGGCGCCAAGCUGUCCCUAUGGAUAGCUU
Stem-loop sequence	CUGUCGAACUGACGCAGUUCGACAUGUACUUGUCGAACUGUGGUUGUUCGAUAGGUAUCCCUGUCGAACCGCGGUUGUUCGACAGGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK288371.1	ncRNA:21   GGGACAGCUUGUUGGCGCCAA   1   |||||||||||||||||*||| targets:346   CCCUGUCGAACAACCGCAGUU   366 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA, clone: J090026F03, full insert sequence	NA	coding protein	psRNATarget
AK070057.1	ncRNA:21   GGGACAGCUUGUUGGCGCCAA   1   ||||*|||||||||||=|||| targets:1679   CCCUAUCGAACAACCGUGGUU   1699 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J023041K22, full insert sequence	NA	coding protein	psRNATarget
AK288290.1	ncRNA:21   GGGACAGCUUGUUGGCGCCAA   1   |=||||=||||||||||*||| targets:2062   CUCUGUUGAACAACCGCAGUU   2082 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090019D06, full insert sequence	NA	coding protein	psRNATarget
AK111593.1	ncRNA:21   GGGACAGCUUGUUGGCGCCAA   1   ==||*|=|||||||||||||* targets:1866   UUCUCUUGAACAACCGCGGUG   1886 Target Full Sequence	3.0	Oryza sativa Japonica Group cDNA clone:J013093F08, full insert sequence	NA	coding protein	psRNATarget
XM_015769951.1	ncRNA:21   GGGACAGCUUGUUGGCGCCAA   1   ==||*|=|||||||||||||* targets:1866   UUCUCUUGAACAACCGCGGUG   1886 Target Full Sequence	3.0	PREDICTED: Oryza sativa Japonica Group cyclin-dependent kinase G-1 (LOC4329899), transcript variant X1, mRNA	cyclin-dependent kinase G-1(LOC4329899)	coding protein	psRNATarget