Search result

BaseInfo

ncRNA ID	novel_osa_miR2001
Species	Oryza sativa
Class	miRNA
Genome position	Chr8:3299389-3299512 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR2097779;SRR2857729
Length	20
Mature sequence(if miRNA)	1 - UGAAGUGUUUGGGGGAACUC - 20
Stem-loop(if miRNA)	--           -             ---       ---------    UAUCGUGCUAGCAAUGGU   UGAAGUGUUUG GGGGAACUCUUGG   UACCAAG         GUGU                  A   ||||||||||| |||||||||||||   |||||||         ||||                  C   ACUUCACGAAC UUCCUUGAGAACC   GUGGUUC         GUUG                  U AC           G             CUU       GCUCUAGAC    CUAUCAAUACGCACAUCC
Stem-loop sequence	UGAAGUGUUUGGGGGAACUCUUGGUACCAAGGUGUUAUCGUGCUAGCAAUGGUACUCCUACACGCAUAACUAUCGUUGCAGAUCUCGCUUGGUGUUCCCAAGAGUUCCUUGCAAGCACUUCACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK111395.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||||||||||||||| targets:318   GAGUUCCCCCAAACACUUCA   337 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-182-D04, full insert sequence	NA	coding protein	psRNATarget
XM_015775300.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   |||||||||||||||||||| targets:322   GAGUUCCCCCAAACACUUCA   341 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331934), mRNA	low affinity sulfate transporter 3(LOC4331934)	coding protein	psRNATarget
AK067353.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:112   GAGUUCACCCAAACACUUCA   131 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013100L12, full insert sequence	NA	coding protein	psRNATarget
XM_015775294.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:529   GAGUUCACCCAAACACUUCA   548 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X3, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775293.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:2647   GAGUUCACCCAAACACUUCA   2666 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X2, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget
XM_015775292.1	ncRNA:20   CUCAAGGGGGUUUGUGAAGU   1   ||||||*||||||||||||| targets:2776   GAGUUCACCCAAACACUUCA   2795 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group low affinity sulfate transporter 3 (LOC4331932), transcript variant X1, mRNA	low affinity sulfate transporter 3(LOC4331932)	coding protein	psRNATarget