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BaseInfo

ncRNA ID novel_osa_miR1999
Species Oryza sativa
Class miRNA
Genome position Chr8:18853347-18853407 [+]
Reference genome IRGSP-1.0
Source SRR1849765
Length 22
Mature sequence(if miRNA) 1 - UUUUCGAUCGUUGGAUCUAGCU - 22
Stem-loop(if miRNA) --   U                 U G  AG
  UUU CGAUCGUUGGAUCUAGC G GC  G
  ||| ||||||||||||||||| | ||  A
  AAA GCUAGCAACCUAGAUUG U CG  U
GC   C                 U G  GG
Stem-loop sequence UUUUCGAUCGUUGGAUCUAGCUGGGCAGGAUGGGCGUUGUUAGAUCCAACGAUCGCAAACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK100297.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  ||||||||||||||||||||||
targets:1351   AGCUAGAUCCAACGAUCGAAAA   1372

0.0 Oryza sativa Japonica Group cDNA clone:J023077B14, full insert sequence NA coding protein psRNATarget
XM_015793616.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  ||||||||||||||||||||||
targets:1526   AGCUAGAUCCAACGAUCGAAAA   1547

0.0 PREDICTED: Oryza sativa Japonica Group probable auxin efflux carrier component 4 (LOC4346116), mRNA probable auxin efflux carrier component 4(LOC4346116) coding protein psRNATarget
LQ236249.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  ||=|||||||||||||||=|||
targets:97   AGUUAGAUCCAACGAUCGGAAA   118

1.5 Sequence 2244 from Patent EP2985353 NA coding protein psRNATarget
HI404119.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  ||=|||||||||||||||=|||
targets:97   AGUUAGAUCCAACGAUCGGAAA   118

1.5 Sequence 2244 from Patent EP2074227 NA coding protein psRNATarget
JB164580.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  ||=|||||||||||||||=|||
targets:97   AGUUAGAUCCAACGAUCGGAAA   118

1.5 Sequence 2244 from Patent EP2559767 NA coding protein psRNATarget
XM_015779289.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||||||
targets:1546   UGUUAGAUCCAACGAUCGAAAA   1567

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X3, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779283.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||||||
targets:1737   UGUUAGAUCCAACGAUCGAAAA   1758

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X2, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
XM_015779276.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||||||
targets:1744   UGUUAGAUCCAACGAUCGAAAA   1765

0.0 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC9266029 (LOC9266029), transcript variant X1, mRNA uncharacterized LOC9266029(LOC9266029) coding protein psRNATarget
HI403939.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||=|||||
targets:64   UGUUAGAUCCAACGAUUGAAAA   85

1.5 Sequence 2064 from Patent EP2074227 NA coding protein psRNATarget
JB164400.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||=|||||
targets:64   UGUUAGAUCCAACGAUUGAAAA   85

1.5 Sequence 2064 from Patent EP2559767 NA coding protein psRNATarget
LQ236069.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||=|||||
targets:64   UGUUAGAUCCAACGAUUGAAAA   85

1.5 Sequence 2064 from Patent EP2985353 NA coding protein psRNATarget
AK108234.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||=|||
targets:493   UGUUAGAUCCAACGAUCGGAAA   514

1.5 Oryza sativa Japonica Group cDNA clone:002-140-G06, full insert sequence NA coding protein psRNATarget
XM_015786123.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||=|||
targets:706   CGUUAGAUCCAACGAUCGGAAA   727

1.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC4340617 (LOC4340617), mRNA uncharacterized LOC4340617(LOC4340617) coding protein psRNATarget
AK103106.1
ncRNA:22   UC--GAUCUAGGUUGCUAGCUUUU   1
  ||--||||||||||||||||=|||
targets:1482   AGUACUAGAUCCAACGAUCGGAAA   1505

1.5 Oryza sativa Japonica Group cDNA clone:J033118O22, full insert sequence NA coding protein psRNATarget
XM_015765802.1
ncRNA:22   UC--GAUCUAGGUUGCUAGCUUUU   1
  ||--||||||||||||||||=|||
targets:1481   AGUACUAGAUCCAACGAUCGGAAA   1504

1.5 PREDICTED: Oryza sativa Japonica Group polygalacturonase (LOC4326679), mRNA polygalacturonase(LOC4326679) coding protein psRNATarget
AK287529.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||=|||
targets:217   CGUUAGAUCCAACGAUCGGAAA   238

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
AK240791.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||=|||
targets:217   CGUUAGAUCCAACGAUCGGAAA   238

1.5 Oryza sativa Japonica Group cDNA, clone: J065001C03, full insert sequence NA coding protein psRNATarget
XM_015778221.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||=|||
targets:3055   UGUUAGAUCCAACGAUCGGAAA   3076

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X2, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015778220.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  *|=|||||||||||||||=|||
targets:3106   UGUUAGAUCCAACGAUCGGAAA   3127

1.5 PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 3-like (LOC107278106), transcript variant X1, mRNA wall-associated receptor kinase 3-like(LOC107278106) coding protein psRNATarget
XM_015779655.1
ncRNA:22   UCGAUCUAGGUUGCUAGCUUUU   1
  **=||*||||||||||||=|||
targets:1550   UCUUAAAUCCAACGAUCGGAAA   1571

2.5 PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107280684 (LOC107280684), transcript variant X1, mRNA uncharacterized LOC107280684(LOC107280684) coding protein psRNATarget
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