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BaseInfo

ncRNA ID	novel_osa_miR1994
Species	Oryza sativa
Class	miRNA
Genome position	Chr7:23435055-23435220 [+]
Reference genome	IRGSP-1.0
Source	SRR1849765;SRR1849770;SRR1849775;SRR1849776;SRR2040399
Length	24
Mature sequence(if miRNA)	143 - GAGUGAUCAAACGUUGUAAGAAAA - 166
Stem-loop(if miRNA)	-UUA            CAC                UUUUU     C    AUAAAAAACGAAAAG     -    AAG  C  U     CUUAUAACGUUU   CACUCGUCUUAUUCAA     UUUUG AAAU               UUGUG CUUA   UA UG A     ||||||||||||   ||||||||||||||||     ||||| ||||               ||||| ||||   || ||     GAAUGUUGCAAA   GUGAGCAGAAUAAGUU     AAAAC UUUA               AACAC GAAU   AU AU U AAAA            CUA                -UUUU     -    AUAAUUAAUAAAAUA     U    GAA  A  A
Stem-loop sequence	UUACUUAUAACGUUUCACCACUCGUCUUAUUCAAUUUUUUUUUGCAAAUAUAAAAAACGAAAAGUUGUGCUUAAAGUACUGUAUAUAAUAAAGUAAGUCACAAAUAAAAUAAUUAAUAAUUUCAAAAUUUUUUGAAUAAGACGAGUGAUCAAACGUUGUAAGAAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_015789462.1	ncRNA:24   AAAAGAAUGUUGCAAACUAGUGAG   1   |||||||||||||||||||||||| targets:581   UUUUCUUACAACGUUUGAUCACUC   604 Target Full Sequence	0.0	PREDICTED: Oryza sativa Japonica Group proline-, glutamic acid- and leucine-rich protein 1 (LOC4343789), mRNA	proline-, glutamic acid- and leucine-rich protein 1(LOC4343789)	coding protein	psRNATarget
AK108488.1	ncRNA:24   AAAAGAAUGUUGCAAACUAGUGAG   1   |||||||||||||||||||||||| targets:119   UUUUCUUACAACGUUUGAUCACUC   142 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:002-143-F11, full insert sequence	NA	coding protein	psRNATarget
XM_015763075.1	ncRNA:24   AAAA-GAAUGUUGCAAACUAGUGAG   1   ||||-||||||||||||||*||||| targets:2842   UUUUGCUUACAACGUUUGACCACUC   2866 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group protein trichome birefringence-like 28 (LOC4327430), transcript variant X3, mRNA	protein trichome birefringence-like 28(LOC4327430)	coding protein	psRNATarget
AK288920.1	ncRNA:24   AAAA-GAAUGUUGCAAACUAGUGAG   1   ||||-|||=||||||||||*||||| targets:3909   UUUUACUUGCAACGUUUGACCACUC   3933 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA, clone: J090081L22, full insert sequence	NA	coding protein	psRNATarget
XM_015767968.1	ncRNA:24   AAAA-GAAUGUUGCAAACUAGUGAG   1   ||||-=|||||||||||||*||||| targets:1438   UUUUGUUUACAACGUUUGACCACUC   1462 Target Full Sequence	1.5	PREDICTED: Oryza sativa Japonica Group altered inheritance rate of mitochondria protein 25 (LOC4328840), mRNA	altered inheritance rate of mitochondria protein 25(LOC4328840)	coding protein	psRNATarget
AK111038.1	ncRNA:24   AAAA-GAAUGUUGCAAACUAGUGAG   1   ||||-|||=||||||||||*||||| targets:492   UUUUGCUUGCAACGUUUGACCACUC   516 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-175-A10, full insert sequence	NA	coding protein	psRNATarget
CT834713.1	ncRNA:24   AAAA-GAAUGUUGCAAACUAGUGAG   1   ||||-|||=||||||||||*||||| targets:494   UUUUGCUUGCAACGUUUGACCACUC   518 Target Full Sequence	2.5	Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA008G23, full insert sequence	NA	coding protein	psRNATarget
JB165009.1	ncRNA:24   AAAA--GAAUGUUGCAAACUAGUGAG   1   *|||--|||=||||||||||*||||| targets:10   AUUUGGCUUGCAACGUUUGACCACUC   35 Target Full Sequence	2.5	Sequence 2673 from Patent EP2559767	NA	coding protein	psRNATarget
LQ236678.1	ncRNA:24   AAAA--GAAUGUUGCAAACUAGUGAG   1   *|||--|||=||||||||||*||||| targets:10   AUUUGGCUUGCAACGUUUGACCACUC   35 Target Full Sequence	2.5	Sequence 2673 from Patent EP2985353	NA	coding protein	psRNATarget
HI404548.1	ncRNA:24   AAAA--GAAUGUUGCAAACUAGUGAG   1   *|||--|||=||||||||||*||||| targets:10   AUUUGGCUUGCAACGUUUGACCACUC   35 Target Full Sequence	2.5	Sequence 2673 from Patent EP2074227	NA	coding protein	psRNATarget